RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 CRKP46108 304 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 NCBP1Q09161 790 aaKnown RBP11.87□□□□□ -0.51
ZNF540-208ENST00000589857 PSMD2Q13200 908 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KRT31Q15323 416 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 CCDC96Q2M329 555 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KMT5BQ4FZB7 885 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KRT79Q5XKE5 535 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 PPP4R3AQ6IN85 833 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 CYP26C1Q6V0L0 522 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 APTXQ7Z2E3 356 aaKnown RBP11.87□□□□□ -0.51
ZNF540-208ENST00000589857 TMEM139Q8IV31 216 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 RETREG2Q8NC44 543 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 TRIM47Q96LD4 638 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 TMEM60Q9H2L4 133 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 KANSL2Q9H9L4 492 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 NYAP2Q9P242 653 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 MYO1AQ9UBC5 1043 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 LRWD1Q9UFC0 647 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 MYH2Q9UKX2 1941 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 PAPPA2Q9BXP8 1791 aa11.87□□□□□ -0.51
ZNF540-208ENST00000589857 MYH6P13533 1939 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 LGALS16A8MUM7 142 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 MPHOSPH10O00566 681 aaKnown RBP11.86□□□□□ -0.51
ZNF540-208ENST00000589857 PPP1R12BO60237 982 aaPredicted RBP11.86□□□□□ -0.51
ZNF540-208ENST00000589857 PRKCSHP14314 528 aaPredicted RBP11.86□□□□□ -0.51
ZNF540-208ENST00000589857 AKR1B1P15121 316 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 PLCG1P19174 1290 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 CCNE1P24864 410 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 PRCPP42785 496 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 DNM2P50570 870 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 ASIC1P78348 528 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 AP3B2Q13367 1082 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 SLC35G1Q2M3R5 365 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 CDC42EP5Q6NZY7 148 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 REXO1L1PQ8IX06 675 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 ZNF710Q8N1W2 664 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 SLC10A4Q96EP9 437 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 GMLQ99445 158 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 IDI2Q9BXS1 227 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 NT5C3AQ9H0P0 336 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 VAT1LQ9HCJ6 419 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 BMP2KQ9NSY1 1161 aaPredicted RBP11.86□□□□□ -0.51
ZNF540-208ENST00000589857 ZNHIT6Q9NWK9 470 aaKnown RBP11.86□□□□□ -0.51
ZNF540-208ENST00000589857 PI4KBQ9UBF8 816 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 SERPINA10Q9UK55 444 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 ABCB11O95342 1321 aa11.86□□□□□ -0.51
ZNF540-208ENST00000589857 COL2A1P02458 1487 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 F8W031 263 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 ENTPD3O75355 529 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 ZBTB48P10074 688 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 SHMT1P34896 483 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 ADKP55263 362 aaKnown RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 PDE4DQ08499 809 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 RBL2Q08999 1139 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 NAALADL2Q58DX5 795 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 HSP90AA4PQ58FG1 418 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 JAKMIP3Q5VZ66 844 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 MOXD1Q6UVY6 613 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TMEM179Q6ZVK1 233 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TXLNBQ8N3L3 684 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 P2RX5Q93086 422 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 MKL1Q969V6 931 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 MED15Q96RN5 788 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 NUP88Q99567 741 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TSG101Q99816 390 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TRIM9Q9C026 710 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TMOD2Q9NZR1 351 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 BIN2Q9UBW5 565 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 ZNF215Q9UL58 517 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 TRIM17Q9Y577 477 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 PPP2R3BQ9Y5P8 575 aa11.85□□□□□ -0.51
ZNF540-208ENST00000589857 ASTN2O75129 1339 aaPredicted RBP11.85□□□□□ -0.51
ZNF540-208ENST00000589857 EFCAB8A8MWE9 144 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 POTEB2H3BUK9 544 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 WNT10BO00744 389 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 KLRC4O43908 158 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 IPO7O95373 1038 aaKnown RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 FOSP01100 380 aaPredicted RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 TNNI2P48788 182 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 USP11P51784 963 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 GNG11P61952 73 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 UBXN1Q04323 297 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 SUPT20HL1Q3ZLR7 823 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 ARHGAP29Q52LW3 1261 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 HABP4Q5JVS0 413 aaKnown RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 FKBP15Q5T1M5 1219 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 APOBEC3HQ6NTF7 200 aaKnown RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 UNC13DQ70J99 1090 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 SLFN12Q8IYM2 578 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 SMYD4Q8IYR2 804 aaPredicted RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 ADGRF4Q8IZF3 695 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 LRRC47Q8N1G4 583 aaKnown RBP11.84□□□□□ -0.51
ZNF540-208ENST00000589857 CERS5Q8N5B7 392 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 KCTD17Q8N5Z5 321 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 CSGALNACT2Q8N6G5 542 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 EHBP1Q8NDI1 1231 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 UBXN4Q92575 508 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 STAMQ92783 540 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 MTMR8Q96EF0 704 aa11.84□□□□□ -0.51
ZNF540-208ENST00000589857 MTMR9Q96QG7 549 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms