RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 USP15Q9Y4E8 981 aaPredicted RBP4.88□□□□□ -1.63
LIG3-211ENST00000588713 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP4.88□□□□□ -1.63
LIG3-211ENST00000588713 ZZEF1O43149 2961 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 SYCE3A1L190 88 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 USP17L10C9JJH3 530 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 EPB41L2O43491 1005 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 ENTPD3O75355 529 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 BRD1O95696 1058 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 ERCC3P19447 782 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 CAP2P40123 477 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 SHC2P98077 582 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 BEX3Q00994 111 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 GABPB1Q06547 395 aaPredicted RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 CUL4AQ13619 759 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 ITGA7Q13683 1181 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 EPC2Q52LR7 807 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 N4BP2L1Q5TBK1 243 aaPredicted RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 CXCL17Q6UXB2 119 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 NCAPG2Q86XI2 1143 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 CREBRFQ8IUR6 639 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 GPR161Q8N6U8 529 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 KDF1Q8NAX2 398 aaPredicted RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 SECISBP2LQ93073 1101 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 INTS4Q96HW7 963 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 MRIQ9BWK5 157 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 MOV10L1Q9BXT6 1211 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 API5Q9BZZ5 524 aaKnown RBP4.87□□□□□ -1.63
LIG3-211ENST00000588713 SPC25Q9HBM1 224 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 CNNM1Q9NRU3 951 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 HYPKQ9NX55 129 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 NRBP1Q9UHY1 535 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 KIF3AQ9Y496 699 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 SIP14410 1827 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 RALGAPA2Q2PPJ7 1873 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 BPTFQ12830 3046 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 ROBO3Q96MS0 1386 aa4.87□□□□□ -1.63
LIG3-211ENST00000588713 LOC105378220A0A1B0GUY1 285 aaPredicted RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L15C9J2P7 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 C19orf81C9J6K1 198 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L13C9JLJ4 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L11C9JVI0 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L18D6R9N7 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L22D6RA61 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L17D6RBQ6 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L19D6RCP7 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L20D6RJB6 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 H3BNC9 293 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 RBAK-RBAKDNI3L0D1 243 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 TULP1O00294 542 aaPredicted RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 SEMA3EO15041 775 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 STRNO43815 780 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 GDF9O60383 454 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 KINO60870 393 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 BAIAP3O94812 1187 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 GJB5O95377 273 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 EYA4O95677 639 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 PGK2P07205 417 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 AOC1P19801 751 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 CST5P28325 142 aaPredicted RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 ANAPC15P60006 121 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 PSMC6P62333 389 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 FAM193AP78312 1265 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 FGD1P98174 961 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 MAP3K10Q02779 954 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 LMOD3Q0VAK6 560 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP17L24Q0WX57 530 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 FOXC1Q12948 553 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 PLS1Q14651 629 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 TAF7LQ5H9L4 462 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 CCDC183Q5T5S1 534 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 ANKRD45Q5TZF3 282 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 C19orf48Q6RUI8 117 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 UBALD2Q8IYN6 164 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 SUMF1Q8NBK3 374 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 SMRP1Q8NCR6 262 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 ZCCHC14Q8WYQ9 949 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 PIK3R5Q8WYR1 880 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 ANKRD7Q92527 254 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 SPSB2Q99619 263 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 FEZ1Q99689 392 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 TINF2Q9BSI4 451 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 WDR18Q9BV38 432 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 LSM14BQ9BX40 385 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 USP26Q9BXU7 913 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 PHAXQ9H814 394 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 DDX4Q9NQI0 724 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 MBIPQ9NS73 344 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 TRMT13Q9NUP7 481 aaKnown RBP4.86□□□□□ -1.63
LIG3-211ENST00000588713 IFT57Q9NWB7 429 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 FAM184BQ9ULE4 1060 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 SRPK3Q9UPE1 567 aa4.86□□□□□ -1.63
LIG3-211ENST00000588713 TCHHQ07283 1943 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 SMCHD1A6NHR9 2005 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 SLC30A4O14863 429 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 ADCY6O43306 1168 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 DUSP11O75319 330 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 PRPF40AO75400 957 aaKnown RBP4.85□□□□□ -1.63
LIG3-211ENST00000588713 GDF11O95390 407 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 MCCP23508 829 aa4.85□□□□□ -1.63
LIG3-211ENST00000588713 RFC2P35250 354 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms