RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 MBTPS1Q14703 1052 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 FAM117BQ6P1L5 589 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 TRAF7Q6Q0C0 670 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 PI4K2BQ8TCG2 481 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 C17orf80Q9BSJ5 609 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 DCTPP1Q9H773 170 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 GTF2IRD1Q9UHL9 959 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 PNMA2Q9UL42 364 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 MYH7BA7E2Y1 1941 aa13□□□□□ -0.33
VPS4B-202ENST00000588059 B4DLN1 442 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 EFCAB14O75071 495 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 GH1P01241 217 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 FGRP09769 529 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 ALADP13716 330 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 MRPL12P52815 198 aaKnown RBP12.99□□□□□ -0.33
VPS4B-202ENST00000588059 IKBKEQ14164 716 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 LY6KQ17RY6 165 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 TRIM71Q2Q1W2 868 aaKnown RBP12.99□□□□□ -0.33
VPS4B-202ENST00000588059 VPS53Q5VIR6 699 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 FBXO22Q8NEZ5 403 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 NEK9Q8TD19 979 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 WNT8BQ93098 351 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 UIMC1Q96RL1 719 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 CRBNQ96SW2 442 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 HDAC6Q9UBN7 1215 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 MYH6P13533 1939 aa12.99□□□□□ -0.33
VPS4B-202ENST00000588059 RALGAPA2Q2PPJ7 1873 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 H3BQ06 376 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 DCXO43602 365 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 CASTP20810 708 aaKnown RBP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 NHLH1Q02575 133 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 ZNF543Q08ER8 600 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 PTK7Q13308 1070 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 MKRN4PQ13434 485 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 CSPP1Q1MSJ5 1256 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 ZNF618Q5T7W0 954 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 C20orf194Q5TEA3 1177 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 CHST3Q7LGC8 479 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 SP7Q8TDD2 431 aaPredicted RBP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 MRPL38Q96DV4 380 aaKnown RBP12.98□□□□□ -0.33
VPS4B-202ENST00000588059 COL4A6Q14031 1691 aa12.98□□□□□ -0.33
VPS4B-202ENST00000588059 POTEB3A0JP26 581 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 F2P00734 622 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 SNHG28P0DPA3 235 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 PSEN2P49810 448 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 HTRA4P83105 476 aaPredicted RBP12.97□□□□□ -0.33
VPS4B-202ENST00000588059 DGKDQ16760 1214 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 PUS10Q3MIT2 529 aaKnown RBP12.97□□□□□ -0.33
VPS4B-202ENST00000588059 USH1GQ495M9 461 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 RRP12Q5JTH9 1297 aaKnown RBP12.97□□□□□ -0.33
VPS4B-202ENST00000588059 POTEBQ6S5H4 581 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 SEPT14Q6ZU15 432 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 C7orf31Q8N865 590 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 RGS22Q8NE09 1264 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 OTUD7AQ8TE49 926 aaPredicted RBP12.97□□□□□ -0.33
VPS4B-202ENST00000588059 FBXL18Q96ME1 805 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 ALG1Q9BT22 464 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 TOMM22Q9NS69 142 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 TCP11L1Q9NUJ3 509 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 COL20A1Q9P218 1284 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 INSL6Q9Y581 213 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 MYO7AQ13402 2215 aa12.97□□□□□ -0.33
VPS4B-202ENST00000588059 WDFY4Q6ZS81 3184 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 HAS3O00219 553 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 LGR5O75473 907 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 ZNF286BP0CG31 522 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 ZP2Q05996 745 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 MFSD10Q14728 455 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 COL19A1Q14993 1142 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 ALX1Q15699 326 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 KIAA0753Q2KHM9 967 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 TIGD5Q53EQ6 642 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 MYOCDQ8IZQ8 938 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 SYTL5Q8TDW5 730 aaPredicted RBP12.96□□□□□ -0.33
VPS4B-202ENST00000588059 TBC1D5Q92609 795 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 EMID1Q96A84 441 aaPredicted RBP12.96□□□□□ -0.33
VPS4B-202ENST00000588059 TAAR1Q96RJ0 339 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 KATNAL1Q9BW62 490 aa12.96□□□□□ -0.33
VPS4B-202ENST00000588059 EMSYQ7Z589 1322 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 AMHP03971 560 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 ZNF200P98182 395 aaPredicted RBP12.95□□□□□ -0.34
VPS4B-202ENST00000588059 HIC1Q14526 733 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 PTPROQ16827 1216 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 EPC2Q52LR7 807 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 TCEAL5Q5H9L2 206 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 BANK1Q8NDB2 785 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 DBF4BQ8NFT6 615 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 PPTC7Q8NI37 304 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 NSUN6Q8TEA1 469 aaKnown RBP12.95□□□□□ -0.34
VPS4B-202ENST00000588059 PABPC5Q96DU9 382 aaKnown RBP12.95□□□□□ -0.34
VPS4B-202ENST00000588059 KCNH6Q9H252 994 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 CPVLQ9H3G5 476 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 CTNNA3Q9UI47 895 aa12.95□□□□□ -0.34
VPS4B-202ENST00000588059 DDX41Q9UJV9 622 aaKnown RBP12.95□□□□□ -0.34
VPS4B-202ENST00000588059 C19orf67A6NJJ6 358 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 H3BNC9 293 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 GOLGA8HP0CJ92 632 aa12.94□□□□□ -0.34
VPS4B-202ENST00000588059 HOXD8P13378 290 aaPredicted RBP12.94□□□□□ -0.34
VPS4B-202ENST00000588059 STXBP2Q15833 593 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms