RNA–Protein interactions for RNA: ENST00000585370.1

LIG3-203, Transcript of DNA ligase 3, humanhuman

TSL 3

Gene LIG3, Length 235 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-203ENST00000585370 CCDC84Q86UT8 332 aaPredicted RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 PRPF38AQ8NAV1 312 aaKnown RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 RAET1EQ8TD07 263 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 TRIM44Q96DX7 344 aaPredicted RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 NUP88Q99567 741 aaPredicted RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 FEZ1Q99689 392 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 RANBP17Q9H2T7 1088 aaKnown RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 MAGEF1Q9HAY2 307 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 CBX8Q9HC52 389 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 SERTAD1Q9UHV2 236 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 DACH1Q9UI36 760 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 MRPL11Q9Y3B7 192 aaKnown RBP11.74□□□□□ -0.53
LIG3-203ENST00000585370 MYPNQ86TC9 1320 aa11.74□□□□□ -0.53
LIG3-203ENST00000585370 LAMA3Q16787 3333 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 CYP3A7-CYP3A51PA0A087WV96 503 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 BECN2A8MW95 431 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 C19orf81C9J6K1 198 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 ACTN4O43707 911 aaKnown RBP11.73□□□□□ -0.53
LIG3-203ENST00000585370 ABCB11O95342 1321 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 MYL1P05976 194 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 CYP3A7P24462 503 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 SARSP49591 514 aaKnown RBP11.73□□□□□ -0.53
LIG3-203ENST00000585370 FCGRTP55899 365 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 TPM4P67936 248 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 TMEM266Q2M3C6 531 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 SPECC1Q5M775 1068 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 GADL1Q6ZQY3 521 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 SMARCE1Q969G3 411 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 EPSTI1Q96J88 318 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 MTMR9Q96QG7 549 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 GTPBP4Q9BZE4 634 aaKnown RBP11.73□□□□□ -0.53
LIG3-203ENST00000585370 DNAJC25Q9H1X3 360 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 TRIOBPQ9H2D6 2365 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 EHMT1Q9H9B1 1298 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 GABRQQ9UN88 632 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 SLC45A1Q9Y2W3 748 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 STK24Q9Y6E0 443 aa11.73□□□□□ -0.53
LIG3-203ENST00000585370 FXR2P51116 673 aaKnown RBP eCLIP11.72□□□□□ -0.534e-8■■■□□ 17.3
LIG3-203ENST00000585370 IQCB1Q15051 598 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 IL17AQ16552 155 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 CALCRLQ16602 461 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 SH3RF1Q7Z6J0 888 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 SPICE1Q8N0Z3 855 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 MLKLQ8NB16 471 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 SPATA20Q8TB22 786 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 DHX58Q96C10 678 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 GSDMAQ96QA5 445 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 MAF1Q9H063 256 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 TMEM60Q9H2L4 133 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 TMEM260Q9NX78 707 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 MAP3K20Q9NYL2 800 aaKnown RBP11.72□□□□□ -0.53
LIG3-203ENST00000585370 RABGAP1Q9Y3P9 1069 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 PCDHA5Q9Y5H7 936 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 PHIPQ8WWQ0 1821 aa11.72□□□□□ -0.53
LIG3-203ENST00000585370 DOCK3Q8IZD9 2030 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 PTPRFP10586 1907 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 SPDYE3A6NKU9 549 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 H0YGN5 161 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 MEIS2O14770 477 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 IKBKBO14920 756 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 TBX3O15119 743 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 GJB1P08034 283 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 CYP3A4P08684 503 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 CCL5P13501 91 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 HOXA7P31268 230 aaPredicted RBP11.71□□□□□ -0.53
LIG3-203ENST00000585370 GJA8P48165 433 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 PNOCQ13519 176 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 KIAA1755Q5JYT7 1200 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 TREML2Q5T2D2 321 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 RRAGBQ5VZM2 374 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 USP49Q70CQ1 688 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 MCF2L2Q86YR7 1114 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 PDILTQ8N807 584 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 ZNF280CQ8ND82 737 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 PAGE5Q96GU1 130 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 MBOAT7Q96N66 472 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 SLF1Q9BQI6 1058 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 ANO3Q9BYT9 981 aa11.71□□□□□ -0.53
LIG3-203ENST00000585370 COLQQ9Y215 455 aaPredicted RBP11.71□□□□□ -0.53
LIG3-203ENST00000585370 MGAMO43451 1857 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 GCOM1H8Y6P7 765 aaPredicted RBP11.7□□□□□ -0.54
LIG3-203ENST00000585370 GTPBP6O43824 516 aaPredicted RBP11.7□□□□□ -0.54
LIG3-203ENST00000585370 MARCH6O60337 910 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 TPM3P06753 285 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 POLR2MP0CAP2 368 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 CIITAP33076 1130 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 SREBF1P36956 1147 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 FLT3LGP49771 235 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 BACE1P56817 501 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 AMPD3Q01432 767 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 SPP2Q13103 211 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 E2F4Q16254 413 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 UBE2SQ16763 222 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 SARM1Q6SZW1 724 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 UBE2Q1Q7Z7E8 422 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 CABP7Q86V35 215 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 LUZP1Q86V48 1076 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 SLFN12Q8IYM2 578 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 IGSF22Q8N9C0 903 aa11.7□□□□□ -0.54
LIG3-203ENST00000585370 SMCR8Q8TEV9 937 aaPredicted RBP11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 95.3 ms