RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 PGM5Q15124 567 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 FAM47CQ5HY64 1035 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 VSIG10LQ86VR7 867 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 RAB11FIP4Q86YS3 637 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 DHX37Q8IY37 1157 aaKnown RBP14.28□□□□□ -0.12
SS18-225ENST00000585121 RASEFQ8IZ41 740 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 PPP1R12CQ9BZL4 782 aa14.28□□□□□ -0.12
SS18-225ENST00000585121 BAZ2BQ9UIF8 2168 aaKnown RBP14.28□□□□□ -0.12
SS18-225ENST00000585121 GRIN2DO15399 1336 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 ZBTB43O43298 467 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 CASTP20810 708 aaKnown RBP14.27□□□□□ -0.12
SS18-225ENST00000585121 LAMC2Q13753 1193 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 DGKDQ16760 1214 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 GNPTABQ3T906 1256 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 C9orf50Q5SZB4 431 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 APOA5Q6Q788 366 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 TMTC3Q6ZXV5 915 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 CCDC82Q8N4S0 544 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 AFG1LQ8WV93 481 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 RNPC3Q96LT9 517 aaKnown RBP14.27□□□□□ -0.12
SS18-225ENST00000585121 TRPV6Q9H1D0 765 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 ALDH8A1Q9H2A2 487 aaPredicted RBP14.27□□□□□ -0.12
SS18-225ENST00000585121 HIPK3Q9H422 1215 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 PPP4R2Q9NY27 417 aa14.27□□□□□ -0.12
SS18-225ENST00000585121 DDX41Q9UJV9 622 aaKnown RBP14.27□□□□□ -0.12
SS18-225ENST00000585121 NAP1L2Q9ULW6 460 aaPredicted RBP14.27□□□□□ -0.12
SS18-225ENST00000585121 MYH6P13533 1939 aa14.27□□□□□ -0.13
SS18-225ENST00000585121 B4GALT4O60513 344 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 STAM2O75886 525 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 MMP3P08254 477 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 TGFB3P10600 412 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 CHMP4BP1P59074 171 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 PTPN11Q06124 597 aaPredicted RBP14.26□□□□□ -0.13
SS18-225ENST00000585121 ARHGAP1Q07960 439 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 COL9A3Q14050 684 aaPredicted RBP14.26□□□□□ -0.13
SS18-225ENST00000585121 RTN1Q16799 776 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 NBPF20Q3BBV1 942 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 NFRKBQ6P4R8 1299 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 CMTR1Q8N1G2 835 aaKnown RBP14.26□□□□□ -0.13
SS18-225ENST00000585121 DEFB123Q8N688 67 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 PSTPIP2Q9H939 334 aa14.26□□□□□ -0.13
SS18-225ENST00000585121 PSMA5P28066 241 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 CYP2C18P33260 490 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 ADCK5Q3MIX3 580 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 EMID1Q96A84 441 aaPredicted RBP14.25□□□□□ -0.13
SS18-225ENST00000585121 TCEANC2Q96MN5 208 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 JAKMIP1Q96N16 626 aaKnown RBP14.25□□□□□ -0.13
SS18-225ENST00000585121 NOD1Q9Y239 953 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 KLF18A0A0U1RQI7 1052 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 GOLGA8AA7E2F4 631 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 GOLGA8BA8MQT2 603 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 PIK3CDO00329 1044 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 CSF2RAP15509 400 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 HSPA4P34932 840 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 RCAN1P53805 252 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 XRRA1Q6P2D8 792 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 PSRC1Q6PGN9 363 aaPredicted RBP14.25□□□□□ -0.13
SS18-225ENST00000585121 USP17L6PQ6QN14 398 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 BLOC1S2Q6QNY1 142 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 HEATR3Q7Z4Q2 680 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 IL31RAQ8NI17 732 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 PPTC7Q8NI37 304 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 KCNB2Q92953 911 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 KATNAL1Q9BW62 490 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 MLXIPQ9HAP2 919 aa14.25□□□□□ -0.13
SS18-225ENST00000585121 LTBP2Q14767 1821 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 CCDC196A0A1B0GTZ2 297 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 hCG_1642624A0A1W2PR95 340 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 EPB41L2O43491 1005 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 GGPS1O95749 300 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 EPHB4P54760 987 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 SMAD3P84022 425 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 CELF3Q5SZQ8 465 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 FAM109BQ6ICB4 259 aaPredicted RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 RPUSD2Q8IZ73 545 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 SPATA33Q96N06 139 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 NOC4LQ9BVI4 516 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 MTIF3Q9H2K0 278 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 EHMT1Q9H9B1 1298 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 IL23AQ9NPF7 189 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 TRMT13Q9NUP7 481 aaKnown RBP14.24□□□□□ -0.13
SS18-225ENST00000585121 BRPF3Q9ULD4 1205 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 SNX14Q9Y5W7 946 aa14.24□□□□□ -0.13
SS18-225ENST00000585121 FRMPD4Q14CM0 1322 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 SPDYE3A6NKU9 549 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 MEIS2O14770 477 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 PPFIA4O75335 1185 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 RGS20O76081 388 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 CCL23P55773 120 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 NEDD9Q14511 834 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 MYSM1Q5VVJ2 828 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 NLRX1Q86UT6 975 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 RETREG2Q8NC44 543 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.23□□□□□ -0.13
SS18-225ENST00000585121 RTEL1Q9NZ71 1219 aa14.23□□□□□ -0.13
SS18-225ENST00000585121 HSFX4A0A1B0GTS1 333 aaPredicted RBP14.22□□□□□ -0.13
SS18-225ENST00000585121 HSFX3A0A1B0GWH4 333 aaPredicted RBP14.22□□□□□ -0.13
SS18-225ENST00000585121 hCG_1984214I3L0E3 225 aa14.22□□□□□ -0.13
SS18-225ENST00000585121 FIBPO43427 364 aa14.22□□□□□ -0.13
SS18-225ENST00000585121 FGBP02675 491 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms