RNA–Protein interactions for RNA: ENST00000583595.1

SS18-223, Transcript of SS18, nBAF chromatin remodeling complex subunit, human

TSL 3

Gene SS18, Length 375 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SS18-223	ENST00000583595	CCDC189	A1A4V9	331 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	SH3BP5	O60239	455 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ZEB2	O60315	1214 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	LRRN2	O75325	713 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	RFPL1	O75677	317 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	PRKD3	O94806	890 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	FBXO21	O94952	628 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	CRTAM	O95727	393 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ESR1	P03372	595 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	C8A	P07357	584 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	TPP2	P29144	1249 aa	Predicted RBP	6.27	□□□□□ -1.41
SS18-223	ENST00000583595	KCNJ6	P48051	423 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF648	Q5T619	568 aa	Predicted RBP	6.27	□□□□□ -1.41
SS18-223	ENST00000583595	CREG2	Q8IUH2	290 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ARHGEF39	Q8N4T4	335 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	DTWD2	Q8NBA8	298 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	RNF141	Q8WVD5	230 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	SMARCC1	Q92922	1105 aa	Predicted RBP	6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ALPK1	Q96QP1	1244 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	6.27	□□□□□ -1.41
SS18-223	ENST00000583595	GBP3	Q9H0R5	595 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	TRIT1	Q9H3H1	467 aa	Known RBP	6.27	□□□□□ -1.41
SS18-223	ENST00000583595	VTA1	Q9NP79	307 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	GPATCH2	Q9NW75	528 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	OBP2A	Q9NY56	170 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	SLAMF8	Q9P0V8	285 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	SPEF1	Q9Y4P9	236 aa		6.27	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF891	A8MT65	544 aa	Predicted RBP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	VSTM5	A8MXK1	200 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	SHOX	O15266	292 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	FLT3	P36888	993 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	VPS72	Q15906	364 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	PRSS53	Q2L4Q9	553 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	ABCB5	Q2M3G0	1257 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	NBPF12	Q5TAG4	269 aa	Predicted RBP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	IL31	Q6EBC2	164 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	ABHD17C	Q6PCB6	329 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	DGKH	Q86XP1	1220 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	C7orf61	Q8IZ16	206 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	OR2W6P	Q8NHA6	318 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	TIFA	Q96CG3	184 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	CCDC120	Q96HB5	630 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	RCC1L	Q96I51	464 aa	Known RBP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	KIRREL1	Q96J84	757 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	KREMEN1	Q96MU8	473 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	CAMKK2	Q96RR4	588 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	UBA5	Q9GZZ9	404 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	MKRN2	Q9H000	416 aa	Known RBP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF700	Q9H0M5	742 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	GP6	Q9HCN6	339 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	CRTAC1	Q9NQ79	661 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	WHRN	Q9P202	907 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	PNMA2	Q9UL42	364 aa		6.26	□□□□□ -1.41
SS18-223	ENST00000583595	LUC7L2	Q9Y383	392 aa	Known RBP	6.26	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF503-AS2	A6NEH8	195 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	IFRD1	O00458	451 aa	Predicted RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	VAMP4	O75379	141 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	FARP2	O94887	1054 aa	Predicted RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	MYBL2	P10244	700 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	SRF	P11831	508 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	CCND1	P24385	295 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	ECI1	P42126	302 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	GFRA1	P56159	465 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	AUH	Q13825	339 aa	Known RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	PPP2R5D	Q14738	602 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	GAB4	Q2WGN9	574 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	RALGPS1	Q5JS13	557 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	IQSEC1	Q6DN90	963 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	GTF2IRD2B	Q6EKJ0	949 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	ZCCHC8	Q6NZY4	707 aa	Known RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	KCNT2	Q6UVM3	1135 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	GTF2IRD2	Q86UP8	949 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	CBARP	Q8N350	705 aa	Predicted RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	TMEM145	Q8NBT3	493 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	KCTD13	Q8WZ19	329 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	LIN37	Q96GY3	246 aa	Predicted RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	GPR62	Q9BZJ7	368 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	LUC7L	Q9NQ29	371 aa	Known RBP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	FAM53C	Q9NYF3	392 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	6.25	□□□□□ -1.41
SS18-223	ENST00000583595	SAMD15	Q9P1V8	674 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	PCDHA8	Q9Y5H6	950 aa		6.25	□□□□□ -1.41
SS18-223	ENST00000583595	LRRC10B	A6NIK2	292 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	F2	P00734	622 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	GLI1	P08151	1106 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	ADCYAP1R1	P41586	468 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	NEK3	P51956	506 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	ZNF445	P59923	1031 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	PCBP2	Q15366	365 aa	Known RBP eCLIP	6.24	□□□□□ -1.41
SS18-223	ENST00000583595	MLANA	Q16655	118 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	DENND5A	Q6IQ26	1287 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	USP53	Q70EK8	1073 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	TSPYL5	Q86VY4	417 aa	Predicted RBP	6.24	□□□□□ -1.41
SS18-223	ENST00000583595	FUBP3	Q96I24	572 aa	Known RBP eCLIP	6.24	□□□□□ -1.41
SS18-223	ENST00000583595	GPR101	Q96P66	508 aa	Predicted RBP	6.24	□□□□□ -1.41
SS18-223	ENST00000583595	ADAMTS10	Q9H324	1103 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	CGGBP1	Q9UFW8	167 aa	Predicted RBP	6.24	□□□□□ -1.41
SS18-223	ENST00000583595	DUSP13	Q9UII6	198 aa		6.24	□□□□□ -1.41
SS18-223	ENST00000583595	FBXL21	Q9UKT6	434 aa		6.24	□□□□□ -1.41

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