RNA–Protein interactions for RNA: ENST00000581536.5

TOP3A-211, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 5

Gene TOP3A, Length 766 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-211ENST00000581536 ERICH2A1L162 156 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 TRIM43BA6NCK2 446 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 C3orf80F5H4A9 247 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 OPLAHO14841 1288 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 ASGR1P07306 291 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 RXRAP19793 462 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 TLE2Q04725 743 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 ADCK5Q3MIX3 580 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 IQSEC1Q6DN90 963 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 FBXO11Q86XK2 927 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 HOMER1Q86YM7 354 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 CMTR1Q8N1G2 835 aaKnown RBP11.29□□□□□ -0.6
TOP3A-211ENST00000581536 NUP133Q8WUM0 1156 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 TRIM43Q96BQ3 446 aaPredicted RBP11.29□□□□□ -0.6
TOP3A-211ENST00000581536 TSEN34Q9BSV6 310 aaKnown RBP11.29□□□□□ -0.6
TOP3A-211ENST00000581536 UPF3AQ9H1J1 476 aaKnown RBP11.29□□□□□ -0.6
TOP3A-211ENST00000581536 RIOX1Q9H6W3 641 aa11.29□□□□□ -0.6
TOP3A-211ENST00000581536 LTBP2Q14767 1821 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 SMAPO00193 183 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 CDC45O75419 566 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 CFBP00751 764 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 ITGB8P26012 769 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 MCM5P33992 734 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 SNX17Q15036 470 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 CASC1Q6TDU7 716 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 CATIPQ7Z7H3 387 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 RGS22Q8NE09 1264 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 SYTL5Q8TDW5 730 aaPredicted RBP11.28□□□□□ -0.6
TOP3A-211ENST00000581536 COPS5Q92905 334 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 VTI1AQ96AJ9 217 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 ZFRQ96KR1 1074 aaKnown RBP11.28□□□□□ -0.6
TOP3A-211ENST00000581536 TCEANC2Q96MN5 208 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 ADD3Q9UEY8 706 aaKnown RBP11.28□□□□□ -0.6
TOP3A-211ENST00000581536 PCDHA1Q9Y5I3 950 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 ABCB11O95342 1321 aa11.28□□□□□ -0.6
TOP3A-211ENST00000581536 DOCK5Q9H7D0 1870 aa11.27□□□□□ -0.6
TOP3A-211ENST00000581536 LAMA3Q16787 3333 aa11.27□□□□□ -0.6
TOP3A-211ENST00000581536 RBM47A0AV96 593 aaKnown RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 SOX1O00570 391 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 SH2B2O14492 632 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 ZBTB5O15062 677 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 CPA1P15085 419 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 BMP8BP34820 402 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 EXOSC10Q01780 885 aaKnown RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 PDE4DQ08499 809 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 SART3Q15020 963 aaKnown RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 NFXL1Q6ZNB6 911 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 ZNF654Q8IZM8 581 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 SRBD1Q8N5C6 995 aaKnown RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 PPP1R13LQ8WUF5 828 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 RNF166Q96A37 237 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 AMNQ9BXJ7 453 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 WDR11Q9BZH6 1224 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 VTA1Q9NP79 307 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 PRDM5Q9NQX1 630 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 STARD7Q9NQZ5 370 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 PNMA2Q9UL42 364 aa11.27□□□□□ -0.61
TOP3A-211ENST00000581536 MRPL11Q9Y3B7 192 aaKnown RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 TRIP12Q14669 1992 aaPredicted RBP11.27□□□□□ -0.61
TOP3A-211ENST00000581536 hCG_1642624A0A1W2PR95 340 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 PQBP1O60828 265 aaKnown RBP11.26□□□□□ -0.61
TOP3A-211ENST00000581536 ARIH2O95376 493 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 PLEKHA8P1O95397 391 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 NEFLP07196 543 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 EDNRBP24530 442 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 CST5P28325 142 aaPredicted RBP11.26□□□□□ -0.61
TOP3A-211ENST00000581536 HOXA13P31271 388 aaPredicted RBP11.26□□□□□ -0.61
TOP3A-211ENST00000581536 CDK7P50613 346 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 NKX3-2P78367 333 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 FAAP100Q0VG06 881 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 C1orf53Q5VUE5 145 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 CXCL17Q6UXB2 119 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 TLK2Q86UE8 772 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 CCDC82Q8N4S0 544 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 DNERQ8NFT8 737 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 BADQ92934 168 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 WNT2BQ93097 391 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 NEK1Q96PY6 1258 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 UBE2OQ9C0C9 1292 aaKnown RBP11.26□□□□□ -0.61
TOP3A-211ENST00000581536 AP5M1Q9H0R1 490 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 SPC25Q9HBM1 224 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 PDLIM7Q9NR12 457 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 GRIN2DO15399 1336 aa11.26□□□□□ -0.61
TOP3A-211ENST00000581536 PNMA6FA0A0J9YX94 578 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 MOXD2PA6NHM9 499 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 CCDC69A6NI79 296 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 EIF2AK2P19525 551 aaKnown RBP11.25□□□□□ -0.61
TOP3A-211ENST00000581536 LIFRP42702 1097 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 HSD17B4P51659 736 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 PSMC6P62333 389 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 FSCN1Q16658 493 aaKnown RBP11.25□□□□□ -0.61
TOP3A-211ENST00000581536 LY6KQ17RY6 165 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 TSGA10IPQ3SY00 556 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 DUSP28Q4G0W2 176 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 SEPT14Q6ZU15 432 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 MCF2L2Q86YR7 1114 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 KRI1Q8N9T8 703 aaKnown RBP11.25□□□□□ -0.61
TOP3A-211ENST00000581536 PCSK9Q8NBP7 692 aaKnown RBP11.25□□□□□ -0.61
TOP3A-211ENST00000581536 ANKK1Q8NFD2 765 aa11.25□□□□□ -0.61
TOP3A-211ENST00000581536 LRCH3Q96II8 777 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms