RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 LCTP09848 1927 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 LINC01553A4QN01 128 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 FGAP02671 866 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 ALADP13716 330 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 KCNA5P22460 613 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 SSTR3P32745 418 aaPredicted RBP11.64□□□□□ -0.55
RFFL-208ENST00000581039 ARHGAP1Q07960 439 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 RBL2Q08999 1139 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 PTK7Q13308 1070 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 MFSD6Q6ZSS7 791 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 MCF2L2Q86YR7 1114 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 FAM178BQ8IXR5 827 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 EVI5LQ96CN4 794 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 TAAR1Q96RJ0 339 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 IWS1Q96ST2 819 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 ALG1Q9BT22 464 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 KATNAL1Q9BW62 490 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 MAF1Q9H063 256 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 HDAC6Q9UBN7 1215 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 ZBTB47Q9UFB7 747 aaPredicted RBP11.64□□□□□ -0.55
RFFL-208ENST00000581039 GTF2IRD1Q9UHL9 959 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 INSL6Q9Y581 213 aa11.64□□□□□ -0.55
RFFL-208ENST00000581039 TET1Q8NFU7 2136 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 PRR33A8MZF0 331 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 GOLGA8HP0CJ92 632 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 SNHG28P0DPA3 235 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 PSEN2P49810 448 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 LAMC2Q13753 1193 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 PUS10Q3MIT2 529 aaKnown RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 MCMDC2Q4G0Z9 681 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 GPATCH4Q5T3I0 446 aaKnown RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 PTCRAQ6ISU1 281 aaPredicted RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 FBXO22Q8NEZ5 403 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 SYTL5Q8TDW5 730 aaPredicted RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 TBC1D5Q92609 795 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 UIMC1Q96RL1 719 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 RMDN3Q96TC7 470 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 UBA5Q9GZZ9 404 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 CTNNA3Q9UI47 895 aa11.63□□□□□ -0.55
RFFL-208ENST00000581039 DDX41Q9UJV9 622 aaKnown RBP11.63□□□□□ -0.55
RFFL-208ENST00000581039 ABCB11O95342 1321 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 PIEZO1Q92508 2521 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 LGR5O75473 907 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 EIF3JO75822 258 aaKnown RBP11.62□□□□□ -0.55
RFFL-208ENST00000581039 AMHP03971 560 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 PCP11498 1178 aaKnown RBP11.62□□□□□ -0.55
RFFL-208ENST00000581039 HAND2P61296 217 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 MFSD10Q14728 455 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 CDC37Q16543 378 aaPredicted RBP11.62□□□□□ -0.55
RFFL-208ENST00000581039 PTPROQ16827 1216 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 CSPP1Q1MSJ5 1256 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 KIAA0753Q2KHM9 967 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 TCTN1Q2MV58 587 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 ZNF618Q5T7W0 954 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 ARHGEF16Q5VV41 709 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 ALYREFQ86V81 257 aaKnown RBP11.62□□□□□ -0.55
RFFL-208ENST00000581039 DHX37Q8IY37 1157 aaKnown RBP11.62□□□□□ -0.55
RFFL-208ENST00000581039 CPVLQ9H3G5 476 aa11.62□□□□□ -0.55
RFFL-208ENST00000581039 BRWD1Q9NSI6 2320 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 EMSYQ7Z589 1322 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 MUC6Q6W4X9 2439 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 TRIP12Q14669 1992 aaPredicted RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 GRXCR2A6NFK2 248 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 PPFIA4O75335 1185 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 HSPD1P10809 573 aaKnown RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 IL9P15248 144 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11.61□□□□□ -0.55
RFFL-208ENST00000581039 DGKHQ86XP1 1220 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 MYOCDQ8IZQ8 938 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 PPTC7Q8NI37 304 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 ESR2Q92731 530 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 EMID1Q96A84 441 aaPredicted RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 MRPL38Q96DV4 380 aaKnown RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 FAM227BQ96M60 508 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 C17orf80Q9BSJ5 609 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 RNF41Q9H4P4 317 aaPredicted RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 COL20A1Q9P218 1284 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 MRPL11Q9Y3B7 192 aaKnown RBP11.61□□□□□ -0.55
RFFL-208ENST00000581039 MRVI1Q9Y6F6 885 aa11.61□□□□□ -0.55
RFFL-208ENST00000581039 TANC1Q9C0D5 1861 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 RSPH10B2B2RC85 870 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 HAS3O00219 553 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 DHX16O60231 1041 aaKnown RBP11.6□□□□□ -0.55
RFFL-208ENST00000581039 F2P00734 622 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 NR3C2P08235 984 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 RSPH10BP0C881 870 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 ZNF286BP0CG31 522 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 EIF2AK2P19525 551 aaKnown RBP11.6□□□□□ -0.55
RFFL-208ENST00000581039 THPOP40225 353 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 ZNF200P98182 395 aaPredicted RBP11.6□□□□□ -0.55
RFFL-208ENST00000581039 MBTPS1Q14703 1052 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 TRIM71Q2Q1W2 868 aaKnown RBP11.6□□□□□ -0.55
RFFL-208ENST00000581039 CCDC178Q5BJE1 867 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 TRAF7Q6Q0C0 670 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 EP400NLQ6ZTU2 488 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 ADGRF4Q8IZF3 695 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 DBF4BQ8NFT6 615 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 ZKSCAN3Q9BRR0 538 aa11.6□□□□□ -0.55
RFFL-208ENST00000581039 FAM50BQ9Y247 325 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms