RNA–Protein interactions for RNA: ENST00000580751.5

SS18-216, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 547 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-216ENST00000580751 PCNX4Q63HM2 1172 aa17.71■□□□□ 0.43
SS18-216ENST00000580751 KRT40Q6A162 431 aa17.71■□□□□ 0.43
SS18-216ENST00000580751 VSIG10LQ86VR7 867 aa17.71■□□□□ 0.43
SS18-216ENST00000580751 FBXO16Q8IX29 292 aaPredicted RBP17.71■□□□□ 0.43
SS18-216ENST00000580751 TRPV1Q8NER1 839 aa17.71■□□□□ 0.43
SS18-216ENST00000580751 PAK6Q9NQU5 681 aaPredicted RBP17.71■□□□□ 0.43
SS18-216ENST00000580751 GJB4Q9NTQ9 266 aa17.71■□□□□ 0.43
SS18-216ENST00000580751 DDX49Q9Y6V7 483 aaKnown RBP17.71■□□□□ 0.43
SS18-216ENST00000580751 MMP1P03956 469 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 MYCLP12524 364 aaPredicted RBP17.7■□□□□ 0.42
SS18-216ENST00000580751 KRT2P35908 639 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 SREBF1P36956 1147 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 FOSBP53539 338 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 SAFBQ15424 915 aaKnown RBP eCLIP17.7■□□□□ 0.42
SS18-216ENST00000580751 EEPD1Q7L9B9 569 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 IL31RAQ8NI17 732 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 RASGRP4Q8TDF6 673 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 TMEM106CQ9BVX2 250 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 FAM184BQ9ULE4 1060 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 ATP6V1DQ9Y5K8 247 aa17.7■□□□□ 0.42
SS18-216ENST00000580751 KIAA0100Q14667 2235 aaKnown RBP17.7■□□□□ 0.42
SS18-216ENST00000580751 M0R2N6 131 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 CCDC144BQ3MJ40 725 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 GNPTABQ3T906 1256 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 KRT25Q7Z3Z0 450 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 FBXO18Q8NFZ0 1043 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 SCFD2Q8WU76 684 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 PGBD1Q96JS3 809 aa17.69■□□□□ 0.42
SS18-216ENST00000580751 DDX20Q9UHI6 824 aaKnown RBP17.69■□□□□ 0.42
SS18-216ENST00000580751 CCDC194A0A1B0GVG4 234 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 H3BQV1 296 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 ADAMTS3O15072 1205 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 GJB1P08034 283 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 ZSCAN22P10073 491 aaPredicted RBP17.68■□□□□ 0.42
SS18-216ENST00000580751 ARHGAP4P98171 946 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 IFFO2Q5TF58 517 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 TAPT1Q6NXT6 567 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 DIS3L2Q8IYB7 885 aaKnown RBP17.68■□□□□ 0.42
SS18-216ENST00000580751 MTMR6Q9Y217 621 aa17.68■□□□□ 0.42
SS18-216ENST00000580751 RBM47A0AV96 593 aaKnown RBP17.67■□□□□ 0.42
SS18-216ENST00000580751 RARBP10826 455 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 CAPN2P17655 700 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 MRPS9P82933 396 aaKnown RBP17.67■□□□□ 0.42
SS18-216ENST00000580751 GUCY1B3Q02153 619 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 TTLL4Q14679 1199 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 NONOQ15233 471 aaKnown RBP eCLIP17.67■□□□□ 0.42
SS18-216ENST00000580751 IQSEC1Q6DN90 963 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 KCNV1Q6PIU1 500 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 CLEC17AQ6ZS10 378 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 INPP4AQ96PE3 977 aaPredicted RBP17.67■□□□□ 0.42
SS18-216ENST00000580751 DEFB118Q96PH6 123 aa17.67■□□□□ 0.42
SS18-216ENST00000580751 ZSCAN16Q9H4T2 348 aaPredicted RBP17.67■□□□□ 0.42
SS18-216ENST00000580751 KIAA1217Q5T5P2 1943 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 BRCA2P51587 3418 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 CYP3A4P08684 503 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 ADCYAP1R1P41586 468 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 TNFAIP2Q03169 654 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 SEPT14Q6ZU15 432 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 NLRX1Q86UT6 975 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 OXER1Q8TDS5 423 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 CRYGNQ8WXF5 182 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 CDHR1Q96JP9 859 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 WDR11Q9BZH6 1224 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 PDGFCQ9NRA1 345 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 MRVI1Q9Y6F6 885 aa17.66■□□□□ 0.42
SS18-216ENST00000580751 BTBD18B2RXH4 712 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 NKRFO15226 690 aaKnown RBP eCLIP17.65■□□□□ 0.42
SS18-216ENST00000580751 FIBPO43427 364 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 DUSP11O75319 330 aaKnown RBP17.65■□□□□ 0.42
SS18-216ENST00000580751 RGS20O76081 388 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 GJA8P48165 433 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 NR5A1Q13285 461 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 GNL2Q13823 731 aaKnown RBP17.65■□□□□ 0.42
SS18-216ENST00000580751 DUSP28Q4G0W2 176 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 LHX8Q68G74 356 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 TBCKQ8TEA7 893 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 U2AF1L4Q8WU68 220 aaKnown RBP17.65■□□□□ 0.42
SS18-216ENST00000580751 TNFRSF25Q93038 417 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 GPRASP2Q96D09 838 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 FOXP1Q9H334 677 aaPredicted RBP17.65■□□□□ 0.42
SS18-216ENST00000580751 RTEL1Q9NZ71 1219 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 UBIAD1Q9Y5Z9 338 aa17.65■□□□□ 0.42
SS18-216ENST00000580751 FRMPD3Q5JV73 1810 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 CCDC85CA6NKD9 419 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 SGPL1O95470 568 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 TXNP10599 105 aaKnown RBP17.64■□□□□ 0.41
SS18-216ENST00000580751 TGFB3P10600 412 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 SMPD1P17405 629 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 ITGB5P18084 799 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 ICAM3P32942 547 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 ZNF76P36508 570 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 USP11P51784 963 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 MTMR1Q13613 665 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 CEP55Q53EZ4 464 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 PIK3AP1Q6ZUJ8 805 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 NIPA1Q7RTP0 329 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 MXRA8Q9BRK3 442 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 CRISPLD2Q9H0B8 497 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 SPC25Q9HBM1 224 aa17.64■□□□□ 0.41
SS18-216ENST00000580751 JADE2Q9NQC1 790 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms