RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 USP26Q9BXU7 913 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 AGXT2Q9BYV1 514 aa17.12■□□□□ 0.33
SS18-212ENST00000579061 STAM2O75886 525 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 TGFB3P10600 412 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 MYCLP12524 364 aaPredicted RBP17.11■□□□□ 0.33
SS18-212ENST00000579061 RPS6KB1P23443 525 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 CCND2P30279 289 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 PURAQ00577 322 aaKnown RBP17.11■□□□□ 0.33
SS18-212ENST00000579061 Q6ZUG5 572 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 FCHSD1Q86WN1 690 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 TEX2Q8IWB9 1127 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 FAM126BQ8IXS8 530 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 SMARCC2Q8TAQ2 1214 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 EMID1Q96A84 441 aaPredicted RBP17.11■□□□□ 0.33
SS18-212ENST00000579061 MTG1Q9BT17 334 aaPredicted RBP17.11■□□□□ 0.33
SS18-212ENST00000579061 DDX41Q9UJV9 622 aaKnown RBP17.11■□□□□ 0.33
SS18-212ENST00000579061 TBX21Q9UL17 535 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 GRIN2DO15399 1336 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 CNTNAP5Q8WYK1 1306 aa17.11■□□□□ 0.33
SS18-212ENST00000579061 GOLGA8AA7E2F4 631 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 GOLGA8BA8MQT2 603 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 MEIS2O14770 477 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 CD4P01730 458 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 RAG1P15918 1043 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 ARHGAP1Q07960 439 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 FUT2Q10981 343 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 LY6KQ17RY6 165 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 LRIT3Q3SXY7 679 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 CCDC82Q8N4S0 544 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 BADQ92934 168 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 MRVI1Q9Y6F6 885 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 NID2Q14112 1375 aa17.1■□□□□ 0.33
SS18-212ENST00000579061 CCDC196A0A1B0GTZ2 297 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 hCG_1984214I3L0E3 225 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 RGS20O76081 388 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 MYL3P08590 195 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 CPA1P15085 419 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 CASTP20810 708 aaKnown RBP17.09■□□□□ 0.33
SS18-212ENST00000579061 ITGB8P26012 769 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 LAMC2Q13753 1193 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 XRRA1Q6P2D8 792 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 ZNF713Q8N859 430 aaPredicted RBP17.09■□□□□ 0.33
SS18-212ENST00000579061 IL31RAQ8NI17 732 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 BRF1Q92994 677 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 TM6SF1Q9BZW5 370 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 PSTPIP2Q9H939 334 aa17.09■□□□□ 0.33
SS18-212ENST00000579061 FAM217BQ9NTX9 383 aaPredicted RBP17.09■□□□□ 0.33
SS18-212ENST00000579061 TIMP1P01033 207 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 CDC27P30260 824 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 METAP2P50579 478 aaKnown RBP eCLIP17.08■□□□□ 0.32
SS18-212ENST00000579061 PSMC6P62333 389 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 APOBRQ0VD83 1088 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 GNPTABQ3T906 1256 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 PPP1R18Q6NYC8 613 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 USP17L6PQ6QN14 398 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 AFG1LQ8WV93 481 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 ZSWIM6Q9HCJ5 1215 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 PCDH10Q9P2E7 1040 aa17.08■□□□□ 0.32
SS18-212ENST00000579061 hCG_1642624A0A1W2PR95 340 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 EIF5BO60841 1220 aaKnown RBP17.07■□□□□ 0.32
SS18-212ENST00000579061 MMP3P08254 477 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 ICAM3P32942 547 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 EVCP57679 992 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 MRPS9P82933 396 aaKnown RBP17.07■□□□□ 0.32
SS18-212ENST00000579061 PTPN11Q06124 597 aaPredicted RBP17.07■□□□□ 0.32
SS18-212ENST00000579061 PCNX4Q63HM2 1172 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 GPR153Q6NV75 609 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 NFRKBQ6P4R8 1299 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 RUFY3Q7L099 469 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 HEATR3Q7Z4Q2 680 aa17.07■□□□□ 0.32
SS18-212ENST00000579061 DHX37Q8IY37 1157 aaKnown RBP17.07■□□□□ 0.32
SS18-212ENST00000579061 INPP4AQ96PE3 977 aaPredicted RBP17.07■□□□□ 0.32
SS18-212ENST00000579061 LAMA3Q16787 3333 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 SUPT20HL2P0C7V6 817 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 FPGSQ05932 587 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 DGKDQ16760 1214 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 MYSM1Q5VVJ2 828 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 WWC2Q6AWC2 1192 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 MFSD5Q6N075 450 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 PPTC7Q8NI37 304 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 GPKOWQ92917 476 aaPredicted RBP eCLIP17.06■□□□□ 0.32
SS18-212ENST00000579061 GLT8D2Q9H1C3 349 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 ALDH8A1Q9H2A2 487 aaPredicted RBP17.06■□□□□ 0.32
SS18-212ENST00000579061 NAP1L2Q9ULW6 460 aaPredicted RBP17.06■□□□□ 0.32
SS18-212ENST00000579061 CYP46A1Q9Y6A2 500 aa17.06■□□□□ 0.32
SS18-212ENST00000579061 V9GY48 417 aaPredicted RBP17.06■□□□□ 0.32
SS18-212ENST00000579061 B4GALT4O60513 344 aa17.05■□□□□ 0.32
SS18-212ENST00000579061 HOXD8P13378 290 aaPredicted RBP17.05■□□□□ 0.32
SS18-212ENST00000579061 ADD1P35611 737 aaKnown RBP17.05■□□□□ 0.32
SS18-212ENST00000579061 NAPAP54920 295 aa17.05■□□□□ 0.32
SS18-212ENST00000579061 NBPF20Q3BBV1 942 aa17.05■□□□□ 0.32
SS18-212ENST00000579061 CELF3Q5SZQ8 465 aaKnown RBP17.05■□□□□ 0.32
SS18-212ENST00000579061 RIC8AQ9NPQ8 531 aa17.05■□□□□ 0.32
SS18-212ENST00000579061 BARHL2Q9NY43 387 aa17.05■□□□□ 0.32
SS18-212ENST00000579061 SPDYE3A6NKU9 549 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 SPATA31C2B4DYI2 1134 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 SOX1O00570 391 aaPredicted RBP17.04■□□□□ 0.32
SS18-212ENST00000579061 FIBPO43427 364 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 PPFIA4O75335 1185 aa17.04■□□□□ 0.32
SS18-212ENST00000579061 GGPS1O95749 300 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms