RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNFX1Q9P2E3 1918 aaKnown RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 SLC15A5A6NIM6 579 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 TBX3O15119 743 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 PRPF40AO75400 957 aaKnown RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 STAM2O75886 525 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 NR3C2P08235 984 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 OR52Z1P0C646 297 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 EIF2AK2P19525 551 aaKnown RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 MRPS9P82933 396 aaKnown RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 CNTN2Q02246 1040 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 CEP55Q53EZ4 464 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 AXDND1Q5T1B0 1012 aaPredicted RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 VSIG10LQ86VR7 867 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 MORC4Q8TE76 937 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 FERMT2Q96AC1 680 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 MXRA8Q9BRK3 442 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 KCNMB3Q9NPA1 279 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 PCDHA7Q9UN72 937 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 SRPRBQ9Y5M8 271 aaKnown RBP18.31■□□□□ 0.52
SS18-211ENST00000578954 IVNS1ABPQ9Y6Y0 642 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 LRRC37A2A6NM11 1700 aa18.31■□□□□ 0.52
SS18-211ENST00000578954 MEIS1O00470 390 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 ADORA2AP29274 412 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 MARCKSP29966 332 aaPredicted RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 CCND2P30279 289 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 UBE2HP62256 183 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 UBXN2AP68543 259 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 SETQ01105 290 aaPredicted RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 ZNF792Q3KQV3 632 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 WDR78Q5VTH9 848 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 ADALQ6DHV7 355 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 ZNF467Q7Z7K2 595 aaPredicted RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 CCAR1Q8IX12 1150 aaKnown RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 KRI1Q8N9T8 703 aaKnown RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 ZNF579Q8NAF0 562 aaKnown RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 ETNPPLQ8TBG4 499 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 RNF186Q9NXI6 227 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 DIS3Q9Y2L1 958 aaKnown RBP18.3■□□□□ 0.52
SS18-211ENST00000578954 MRVI1Q9Y6F6 885 aa18.3■□□□□ 0.52
SS18-211ENST00000578954 A0A1W2PQ27 194 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 A0A1W2PQ64 194 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 A0A1W2PQD8 194 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 CUTAO60888 179 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 ITGB5P18084 799 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 ME1P48163 572 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 CALCRLQ16602 461 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 MORN1Q5T089 497 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 HAS1Q92839 578 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 JADE2Q9NQC1 790 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 SAGE1Q9NXZ1 904 aa18.29■□□□□ 0.52
SS18-211ENST00000578954 B4DLN1 442 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 COBLO75128 1261 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 GADD45BO75293 160 aaPredicted RBP18.28■□□□□ 0.52
SS18-211ENST00000578954 PGK2P07205 417 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 HOXC6P09630 235 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 ZNF76P36508 570 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 IL17AQ16552 155 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 PRR16Q569H4 304 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 CYP2W1Q8TAV3 490 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 USP6NLQ92738 828 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 FAM20AQ96MK3 541 aa18.28■□□□□ 0.52
SS18-211ENST00000578954 INPP4AQ96PE3 977 aaPredicted RBP18.28■□□□□ 0.52
SS18-211ENST00000578954 MGAMO43451 1857 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 PLXNA1Q9UIW2 1896 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 FAM237AA0A1B0GTK4 181 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 FXR2P51116 673 aaKnown RBP eCLIP18.27■□□□□ 0.52
SS18-211ENST00000578954 GRIN1Q05586 938 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 PLA2G4DQ86XP0 818 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 SOCS4Q8WXH5 440 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 GPRASP2Q96D09 838 aa18.27■□□□□ 0.52
SS18-211ENST00000578954 MPHOSPH6Q99547 160 aaKnown RBP18.27■□□□□ 0.52
SS18-211ENST00000578954 DOCK3Q8IZD9 2030 aa18.27■□□□□ 0.51
SS18-211ENST00000578954 MSH4O15457 936 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 MAFGO15525 162 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 EIF3JO75822 258 aaKnown RBP18.26■□□□□ 0.51
SS18-211ENST00000578954 RGS20O76081 388 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 TBC1D8O95759 1140 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 MYCLP12524 364 aaPredicted RBP18.26■□□□□ 0.51
SS18-211ENST00000578954 CMA1P23946 247 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 CTGFP29279 349 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 LONP1P36776 959 aaKnown RBP18.26■□□□□ 0.51
SS18-211ENST00000578954 LACTBP83111 547 aaPredicted RBP18.26■□□□□ 0.51
SS18-211ENST00000578954 MAP2K5Q13163 448 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 STXBP2Q15833 593 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 DTHD1Q6ZMT9 781 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 SLFN12Q8IYM2 578 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 SLC5A5Q92911 643 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 GJD2Q9UKL4 321 aa18.26■□□□□ 0.51
SS18-211ENST00000578954 ASB14A6NK59 587 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 TRPA1O75762 1119 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 ICAM3P32942 547 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 RESP18Q5W5W9 173 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 SHC4Q6S5L8 630 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 MAMDC4Q6UXC1 1216 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 NLRX1Q86UT6 975 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 MSL3Q8N5Y2 521 aaKnown RBP18.25■□□□□ 0.51
SS18-211ENST00000578954 IGSF22Q8N9C0 903 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 CLIC6Q96NY7 704 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 CSRNP2Q9H175 543 aa18.25■□□□□ 0.51
SS18-211ENST00000578954 KCNH7Q9NS40 1196 aa18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms