RNA–Protein interactions for RNA: ENST00000574003.1

RPAIN-214, Transcript of RPA interacting protein, humanhuman

TSL 4 BASIC

Gene RPAIN, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-214ENST00000574003 BCAS3Q9H6U6 928 aa13.12□□□□□ -0.31
RPAIN-214ENST00000574003 DDX41Q9UJV9 622 aaKnown RBP13.12□□□□□ -0.31
RPAIN-214ENST00000574003 SCN5AQ14524 2016 aa13.12□□□□□ -0.31
RPAIN-214ENST00000574003 CCDC69A6NI79 296 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 B4DLN1 442 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 GCOM1H8Y6P7 765 aaPredicted RBP13.11□□□□□ -0.31
RPAIN-214ENST00000574003 CDC45O75419 566 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 GH1P01241 217 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 MMP3P08254 477 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 POLR2MP0CAP2 368 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 MRPL12P52815 198 aaKnown RBP13.11□□□□□ -0.31
RPAIN-214ENST00000574003 GHRHRQ02643 423 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 PPIGQ13427 754 aaKnown RBP eCLIP13.11□□□□□ -0.312e-8■■■□□ 15.8
RPAIN-214ENST00000574003 USP17L6PQ6QN14 398 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 CTCFLQ8NI51 663 aaPredicted RBP13.11□□□□□ -0.31
RPAIN-214ENST00000574003 VWCEQ96DN2 955 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 TTYH1Q9H313 450 aaPredicted RBP13.11□□□□□ -0.31
RPAIN-214ENST00000574003 MRVI1Q9Y6F6 885 aa13.11□□□□□ -0.31
RPAIN-214ENST00000574003 TRIP12Q14669 1992 aaPredicted RBP13.11□□□□□ -0.31
RPAIN-214ENST00000574003 EIF3JO75822 258 aaKnown RBP13.1□□□□□ -0.31
RPAIN-214ENST00000574003 ZNF286BP0CG31 522 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 CPA1P15085 419 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 PBX2P40425 430 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 SP2Q02086 613 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 ZNF697Q5TEC3 545 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 VSIG10LQ86VR7 867 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 MICU3Q86XE3 530 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 TMEM199Q8N511 208 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 KAT2BQ92831 832 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 RRP36Q96EU6 259 aaKnown RBP13.1□□□□□ -0.31
RPAIN-214ENST00000574003 TMEM87BQ96K49 555 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 SPZ1Q9BXG8 430 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 CXXC1Q9P0U4 656 aaPredicted RBP13.1□□□□□ -0.31
RPAIN-214ENST00000574003 TELO2Q9Y4R8 837 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 DOCK5Q9H7D0 1870 aa13.1□□□□□ -0.31
RPAIN-214ENST00000574003 TET1Q8NFU7 2136 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 KIF5BP33176 963 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 MRPS9P82933 396 aaKnown RBP13.09□□□□□ -0.31
RPAIN-214ENST00000574003 SMAD3P84022 425 aaKnown RBP13.09□□□□□ -0.31
RPAIN-214ENST00000574003 BRDTQ58F21 947 aaPredicted RBP13.09□□□□□ -0.31
RPAIN-214ENST00000574003 OTOP2Q7RTS6 562 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 NEK1Q96PY6 1258 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 ALG1Q9BT22 464 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 MAF1Q9H063 256 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 SEMA6BQ9H3T3 888 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 IL23AQ9NPF7 189 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 RTEL1Q9NZ71 1219 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 BRPF3Q9ULD4 1205 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 SLC12A7Q9Y666 1083 aa13.09□□□□□ -0.31
RPAIN-214ENST00000574003 GGPS1O95749 300 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 UBA1P22314 1058 aaKnown RBP13.08□□□□□ -0.32
RPAIN-214ENST00000574003 CCND2P30279 289 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 LIFRP42702 1097 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 EXOSC10Q01780 885 aaKnown RBP13.08□□□□□ -0.32
RPAIN-214ENST00000574003 SEMA3FQ13275 785 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 UBE2SQ16763 222 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 GDF6Q6KF10 455 aaPredicted RBP13.08□□□□□ -0.32
RPAIN-214ENST00000574003 TMTC3Q6ZXV5 915 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 DEFB128Q7Z7B8 93 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 DHX37Q8IY37 1157 aaKnown RBP13.08□□□□□ -0.32
RPAIN-214ENST00000574003 MYLIPQ8WY64 445 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 CTAGE1Q96RT6 745 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 MAP3K14Q99558 947 aa13.08□□□□□ -0.32
RPAIN-214ENST00000574003 HSFX4A0A1B0GTS1 333 aaPredicted RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 HSFX3A0A1B0GWH4 333 aaPredicted RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 MEIS2O14770 477 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 KPNA6O60684 536 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 ZNF200P98182 395 aaPredicted RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 HIC1Q14526 733 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 HSDL1Q3SXM5 330 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 RASIP1Q5U651 963 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 MYSM1Q5VVJ2 828 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 NFRKBQ6P4R8 1299 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 SGMS1Q86VZ5 419 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 TMTC2Q8N394 836 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 FANCBQ8NB91 859 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 SMARCC2Q8TAQ2 1214 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 SPATA33Q96N06 139 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 CDX2Q99626 313 aaPredicted RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 MTA3Q9BTC8 594 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 MAP3K20Q9NYL2 800 aaKnown RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 HDAC6Q9UBN7 1215 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 SEC63Q9UGP8 760 aaKnown RBP13.07□□□□□ -0.32
RPAIN-214ENST00000574003 STXBP5LQ9Y2K9 1186 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 CDH23Q9H251 3354 aa13.07□□□□□ -0.32
RPAIN-214ENST00000574003 FGBP02675 491 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 CASTP20810 708 aaKnown RBP13.06□□□□□ -0.32
RPAIN-214ENST00000574003 DNAJB2P25686 324 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 PSEN2P49810 448 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 GNAQP50148 359 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 RABGGTBP53611 331 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 LAMC2Q13753 1193 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 PTGISQ16647 500 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 DGKDQ16760 1214 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 CELF3Q5SZQ8 465 aaKnown RBP13.06□□□□□ -0.32
RPAIN-214ENST00000574003 RNF20Q5VTR2 975 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 PSRC1Q6PGN9 363 aaPredicted RBP13.06□□□□□ -0.32
RPAIN-214ENST00000574003 APOA5Q6Q788 366 aa13.06□□□□□ -0.32
RPAIN-214ENST00000574003 DHX32Q7L7V1 743 aaKnown RBP13.06□□□□□ -0.32
RPAIN-214ENST00000574003 HERVK_113Q902F9 699 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms