RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 LRCH2Q5VUJ6 765 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 CC2D1AQ6P1N0 951 aaPredicted RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 ALAS1P13196 640 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 HOXA7P31268 230 aaPredicted RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 ARL1P40616 181 aaPredicted RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 VPS41P49754 854 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 PFKFB3Q16875 520 aaPredicted RBP16.77■□□□□ 0.28
CIITA-204ENST00000570546 ATG9AQ7Z3C6 839 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 FAM186BQ8IYM0 893 aa16.77■□□□□ 0.28
CIITA-204ENST00000570546 THAP12O43422 761 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 LRRC63Q05C16 580 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 RABL6Q3YEC7 729 aaPredicted RBP16.77■□□□□ 0.27
CIITA-204ENST00000570546 DGKHQ86XP1 1220 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 STK38LQ9Y2H1 464 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP16.77■□□□□ 0.27
CIITA-204ENST00000570546 TRIM49BA6NDI0 452 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 TCP10L2B9ZVM9 353 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 I3L4J1 428 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 LIG4P49917 911 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 SNX16P57768 344 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 DIXDC1Q155Q3 683 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 LGSNQ5TDP6 509 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 EMILIN3Q9NT22 766 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 KLHL14Q9P2G3 628 aa16.77■□□□□ 0.27
CIITA-204ENST00000570546 INO80Q9ULG1 1556 aaPredicted RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 LGALS16A8MUM7 142 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 UBE2SQ16763 222 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 CCDC127Q96BQ5 260 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 TYW1Q9NV66 732 aaKnown RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 STK10O94804 968 aaKnown RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 ATF2P15336 505 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 TSNAXIP1Q2TAA8 658 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 ENAHQ8N8S7 591 aaPredicted RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 PBKQ96KB5 322 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 IL25Q9H293 177 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 CPS1P31327 1500 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 PABPN1LA6NDY0 278 aaKnown RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 SLC7A5Q01650 507 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 RASA3Q14644 834 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 MESDQ14696 234 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 TTC16Q8NEE8 873 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 RUNDC3BQ96NL0 473 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 ISCA1Q9BUE6 129 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 MEIS1O00470 390 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 DLATP10515 647 aaKnown RBP16.76■□□□□ 0.27
CIITA-204ENST00000570546 SLC8A3P57103 927 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 SSX2IPQ9Y2D8 614 aa16.76■□□□□ 0.27
CIITA-204ENST00000570546 PPEF1O14829 653 aaPredicted RBP16.75■□□□□ 0.27
CIITA-204ENST00000570546 CLIC2O15247 247 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PLA2G4BP0C869 781 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 CYP2D6P10635 497 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 HSPA1LP34931 641 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 C10orf76Q5T2E6 689 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 RSAD2Q8WXG1 361 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 CDK8P49336 464 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 ALS2CLQ60I27 953 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 MCF2L2Q86YR7 1114 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 MTA3Q9BTC8 594 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 ANAPC4Q9UJX5 808 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PTPN22Q9Y2R2 807 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 FOXN1O15353 648 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 IFNB1P01574 187 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 POLD1P28340 1107 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 MFAP3P55082 362 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 YWHAEP62258 255 aaKnown RBP16.75■□□□□ 0.27
CIITA-204ENST00000570546 DMP1Q13316 513 aaPredicted RBP16.75■□□□□ 0.27
CIITA-204ENST00000570546 NNTQ13423 1086 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 IQCB1Q15051 598 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PLCD3Q8N3E9 789 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 SNAP23O00161 211 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PRCPP42785 496 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PSMC4P43686 418 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 EFCAB13Q8IY85 973 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 ARHGAP24Q8N264 748 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 CCDC110Q8TBZ0 833 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 GCNT4Q9P109 453 aa16.75■□□□□ 0.27
CIITA-204ENST00000570546 PRPF6O94906 941 aaKnown RBP16.74■□□□□ 0.27
CIITA-204ENST00000570546 GYS2P54840 703 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 PALM2Q8IXS6 379 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 MAGOHBQ96A72 148 aaKnown RBP16.74■□□□□ 0.27
CIITA-204ENST00000570546 STK32BQ9NY57 414 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 OVOS2A0A0J9YW53 1432 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 OVOS2Q6IE36 1432 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 GFPT2O94808 682 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 SCARF1Q14162 830 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 SGMS1Q86VZ5 419 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 DAAM1Q9Y4D1 1078 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 TROVE2P10155 538 aaKnown RBP eCLIP16.74■□□□□ 0.27
CIITA-204ENST00000570546 VPS52Q8N1B4 723 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 SERPINB13Q9UIV8 391 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 SPATA31A3Q5VYP0 1347 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 PHBP35232 272 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 NT5C2P49902 561 aa16.74■□□□□ 0.27
CIITA-204ENST00000570546 TEX33O43247 280 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 DAPK3O43293 454 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 RASSF2P50749 326 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 UBXN2AP68543 259 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 IFT88Q13099 833 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 BBOF1Q8ND07 529 aa16.73■□□□□ 0.27
CIITA-204ENST00000570546 RAB3IPQ96QF0 476 aaPredicted RBP16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms