RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, human

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-238	ENST00000569430	CYP2D6	P10635	497 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	MDM2	Q00987	491 aa	Predicted RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	STK4	Q13043	487 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	ARHGAP44	Q17R89	818 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	FAM26F	Q5R3K3	315 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	VSIG1	Q86XK7	387 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	WHAMM	Q8TF30	809 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	NBPF3	Q9H094	633 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	INTS9	Q9NV88	658 aa	Known RBP	12.52	□□□□□ -0.41
CLN3-238	ENST00000569430	ABCC12	Q96J65	1359 aa		12.52	□□□□□ -0.41
CLN3-238	ENST00000569430		A0A1W2PQC6	194 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	GMNC	A6NCL1	334 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	LDHB	P07195	334 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	H2AFZ	P0C0S5	128 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	HIBADH	P31937	336 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ADAM9	Q13443	819 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ZKSCAN8	Q15776	578 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	H2AFV	Q71UI9	128 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	TGFBRAP1	Q8WUH2	860 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ATP6V1G3	Q96LB4	118 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	STMN4	Q9H169	189 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	NUCKS1	Q9H1E3	243 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	FAM217B	Q9NTX9	383 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	AMFR	Q9UKV5	643 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	TNFAIP3	P21580	790 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	HDLBP	Q00341	1268 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	TXNRD1	Q16881	649 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	DDX42	Q86XP3	938 aa	Known RBP eCLIP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	FMNL3	Q8IVF7	1028 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	TEX11	Q8IYF3	940 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	CCDC105	Q8IYK2	499 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	SRBD1	Q8N5C6	995 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	RDH13	Q8NBN7	331 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	CTTNBP2NL	Q9P2B4	639 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	SUFU	Q9UMX1	484 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	KIF13A	Q9H1H9	1805 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	NWD1	Q149M9	1564 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	PDE2A	O00408	941 aa	Predicted RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	VPS41	P49754	854 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ATP11A	P98196	1134 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ARL6IP4	Q66PJ3	421 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	LARP4B	Q92615	738 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	IQCD	Q96DY2	449 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	DYNLL2	Q96FJ2	89 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	ELAC2	Q9BQ52	826 aa	Known RBP	12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	GOLPH3	Q9H4A6	298 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	NCAPD2	Q15021	1401 aa		12.51	□□□□□ -0.41
CLN3-238	ENST00000569430	SPOP	O43791	374 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	CETN1	Q12798	172 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	ZRSR2	Q15696	482 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	ALX1	Q15699	326 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	KIRREL3	Q8IZU9	778 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	TBCK	Q8TEA7	893 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	EPN3	Q9H201	632 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	HAUS2	Q9NVX0	235 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	USP17L3	A6NCW0	530 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	USP17L4	A6NCW7	530 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	SRGN	P10124	158 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	MDH1	P40925	334 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	FKBP3	Q00688	224 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	INTS8	Q75QN2	995 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	USP17L1	Q7RTZ2	530 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	CADPS2	Q86UW7	1296 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	IFT74	Q96LB3	600 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	NLRP3	Q96P20	1036 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	PHF20	Q9BVI0	1012 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	PANK4	Q9NVE7	773 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	ARMCX3	Q9UH62	379 aa	Predicted RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	PGRMC1	O00264	195 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	USP17L8	P0C7I0	530 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	GEMIN8	Q9NWZ8	242 aa	Known RBP	12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	GGT7	Q9UJ14	662 aa		12.5	□□□□□ -0.41
CLN3-238	ENST00000569430	FRMPD2	Q68DX3	1309 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	PHF20L1	A8MW92	1017 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	MYO1E	Q12965	1108 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	KCTD19	Q17RG1	926 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	GPBP1	Q86WP2	473 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	ERMN	Q8TAM6	284 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	RAB17	Q9H0T7	212 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	NKIRAS1	Q9NYS0	192 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	ASIC3	Q9UHC3	531 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	C6orf229	H3BNL8	230 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	EPB41	P11171	864 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	PMS1	P54277	932 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	THOC1	Q96FV9	657 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	ISCA1	Q9BUE6	129 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	ACTR5	Q9H9F9	607 aa	Predicted RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	RNF14	Q9UBS8	474 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	CEP83	Q9Y592	693 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	SETDB1	Q15047	1291 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	PAPD7	Q5XG87	772 aa	Known RBP	12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	RGPD2	P0DJD1	1756 aa		12.49	□□□□□ -0.41
CLN3-238	ENST00000569430	TMEM94	Q12767	1356 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	SPDYE3	A6NKU9	549 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	XRCC5	P13010	732 aa	Known RBP	12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	ZBTB16	Q05516	673 aa		12.48	□□□□□ -0.41
CLN3-238	ENST00000569430	HS2ST1	Q7LGA3	356 aa		12.48	□□□□□ -0.41

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