RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 PPP1R12CQ9BZL4 782 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PANK4Q9NVE7 773 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 SPO11Q9Y5K1 396 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PTPDC1A2A3K4 754 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 IRS4O14654 1257 aaPredicted RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 P4HA2O15460 535 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PPP1R37O75864 691 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PDE8BO95263 885 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ADD2P35612 726 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 IL6STP40189 918 aaPredicted RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 PHKA1P46020 1223 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 IGBP1P78318 339 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 DPCR1Q3MIW9 517 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 SUSD4Q5VX71 490 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 CCDC70Q6NSX1 233 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 TMEM154Q6P9G4 183 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 CRELD2Q6UXH1 353 aaPredicted RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 KIF6Q6ZMV9 814 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 HELBQ8NG08 1087 aaPredicted RBP11.92□□□□□ -0.5
CLK3-226ENST00000569406 CYFIP2Q96F07 1278 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 ARHGEF10LQ9HCE6 1279 aa11.92□□□□□ -0.5
CLK3-226ENST00000569406 PALM3A6NDB9 673 aaPredicted RBP11.91□□□□□ -0.5
CLK3-226ENST00000569406 MMEP08473 750 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 SMARCA1P28370 1054 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 ZNF274Q96GC6 653 aaPredicted RBP11.91□□□□□ -0.5
CLK3-226ENST00000569406 IWS1Q96ST2 819 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 GOLPH3LQ9H4A5 285 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 SENP2Q9HC62 589 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 DLGAP2Q9P1A6 1054 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 WTIPA6NIX2 430 aaPredicted RBP11.91□□□□□ -0.5
CLK3-226ENST00000569406 CPLX1O14810 134 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 RFC5P40937 340 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 MTF1Q14872 753 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 DPY19L2Q6NUT2 758 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 TBC1D10CQ8IV04 446 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 APPBP2Q92624 585 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 JAKMIP2Q96AA8 810 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 SYT15Q9BQS2 421 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 OSBPL10Q9BXB5 764 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 CARMIL3Q8ND23 1372 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 CACNA1SQ13698 1873 aa11.91□□□□□ -0.5
CLK3-226ENST00000569406 PDLIM1O00151 329 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 HNRNPRO43390 633 aaKnown RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 CAMTA2O94983 1202 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 TRPC1P48995 793 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 HAND2P61296 217 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 PABPC1LQ4VXU2 614 aaKnown RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 ERICH1Q86X53 443 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 SPICE1Q8N0Z3 855 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 SLC35F6Q8N357 371 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 DPF2Q92785 391 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 MOV10L1Q9BXT6 1211 aaKnown RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 SYNRGQ9UMZ2 1314 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 A0A0U1RQJ8 604 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 GPAA1O43292 621 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 FAM107AO95990 144 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 MLH1P40692 756 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 NNTQ13423 1086 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 LDHAL6AQ6ZMR3 332 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 RPS6KC1Q96S38 1066 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 POLR3CQ9BUI4 534 aaPredicted RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 GJB4Q9NTQ9 266 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 ZNF180Q9UJW8 692 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 TMEM232C9JQI7 657 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 SKOR1P84550 965 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 STK38Q15208 465 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 CCDC102BQ68D86 513 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 NAA16Q6N069 864 aaPredicted RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 MAATS1Q7Z4T9 603 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 OXCT2Q9BYC2 517 aaPredicted RBP11.9□□□□□ -0.5
CLK3-226ENST00000569406 PCDH18Q9HCL0 1135 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 ABCF3Q9NUQ8 709 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 WWC3Q9ULE0 1092 aa11.9□□□□□ -0.5
CLK3-226ENST00000569406 NPTXRO95502 500 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 HPDP32754 393 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 HOXD12P35452 270 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 TTMPQ5BVD1 217 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 TTC39AQ5SRH9 613 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 C6orf89Q6UWU4 347 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 ZNF365Q70YC5 407 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 SLC15A3Q8IY34 581 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 SMC1BQ8NDV3 1235 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 ENGASEQ8NFI3 743 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 KIFAP3Q92845 792 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 SLF1Q9BQI6 1058 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 COL1A1P02452 1464 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 SCN7AQ01118 1682 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 POLR3DP05423 398 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 NFKBIAP25963 317 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 CYB5R4Q7L1T6 521 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 TEX9Q8N6V9 391 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 CNKSR1Q969H4 720 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 L3MBTL3Q96JM7 780 aaPredicted RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 SEC31BQ9NQW1 1179 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 RCOR1Q9UKL0 485 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 R3HDM2Q9Y2K5 976 aaKnown RBP11.89□□□□□ -0.51
CLK3-226ENST00000569406 AKR1B10O60218 316 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 PDE8AO60658 829 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 PSMC4P43686 418 aa11.89□□□□□ -0.51
CLK3-226ENST00000569406 USP14P54578 494 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms