RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	MYOCD	Q8IZQ8	938 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	KAT2B	Q92831	832 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	WNT8B	Q93098	351 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	GMCL1	Q96IK5	515 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	NSUN3	Q9H649	340 aa	Known RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	TRPC6	Q9Y210	931 aa		13.97	□□□□□ -0.17
CLK3-222	ENST00000568232	TRIP12	Q14669	1992 aa	Predicted RBP	13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	TMEM221	A6NGB7	291 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232		M0R296	226 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	NKRF	O15226	690 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	ATMIN	O43313	823 aa	Predicted RBP	13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	MBTPS2	O43462	519 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	PLA2G6	O60733	806 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	ICAM1	P05362	532 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	TSPY3	P0CV98	308 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	TSPY8	P0CW00	308 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	CALML3	P27482	149 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	FOXK2	Q01167	660 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	PDE4D	Q08499	809 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	HSP90AB4P	Q58FF6	505 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	ZNF618	Q5T7W0	954 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	RCSD1	Q6JBY9	416 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	TRAF7	Q6Q0C0	670 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	BMP8A	Q7Z5Y6	402 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	NEDD1	Q8NHV4	660 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	SCFD2	Q8WU76	684 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	AFG1L	Q8WV93	481 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	KIF1BP	Q96EK5	621 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	ALG13	Q9NP73	1137 aa	Known RBP	13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	MTMR7	Q9Y216	660 aa		13.96	□□□□□ -0.17
CLK3-222	ENST00000568232	MAP3K13	O43283	966 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	EFCAB14	O75071	495 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	PARN	O95453	639 aa	Known RBP	13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	TFAP4	Q01664	338 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	PDE4B	Q07343	736 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	RBL2	Q08999	1139 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	GIMAP6	Q6P9H5	292 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	TRIM67	Q6ZTA4	783 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	SESTD1	Q86VW0	696 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	FTSJ3	Q8IY81	847 aa	Known RBP	13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	TMEM192	Q8IY95	271 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	OSBP2	Q969R2	916 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	HDAC6	Q9UBN7	1215 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	CACNA1A	O00555	2505 aa		13.95	□□□□□ -0.18
CLK3-222	ENST00000568232	TECTA	O75443	2155 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	LGR5	O75473	907 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	UPP2	O95045	317 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	AMH	P03971	560 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	MMP3	P08254	477 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	GTF2F1	P35269	517 aa	Known RBP eCLIP	13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	SLC16A2	P36021	539 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	TDO2	P48775	406 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	ZNF200	P98182	395 aa	Predicted RBP	13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	CTC1	Q2NKJ3	1217 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	TRIM71	Q2Q1W2	868 aa	Known RBP	13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	TTBK2	Q6IQ55	1244 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	ZSCAN25	Q6NSZ9	544 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	CHST3	Q7LGC8	479 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	DBF4B	Q8NFT6	615 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	ALG1	Q9BT22	464 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	ZNF287	Q9HBT7	754 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	GTF2IRD1	Q9UHL9	959 aa		13.94	□□□□□ -0.18
CLK3-222	ENST00000568232	LOC102724159	A0A0B4J2E5	919 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	STXBP3	O00186	592 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	NMT2	O60551	498 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	APP	P05067	770 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	EDNRB	P24530	442 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	HYAL1	Q12794	435 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	PWP2	Q15269	919 aa	Known RBP	13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	LY6K	Q17RY6	165 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	FBXO11	Q86XK2	927 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	SUGP1	Q8IWZ8	645 aa	Known RBP	13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	C7orf31	Q8N865	590 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	CLEC4D	Q8WXI8	215 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	SAMD11	Q96NU1	681 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	POP1	Q99575	1024 aa	Known RBP	13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	PRRX2	Q99811	253 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	RANBP17	Q9H2T7	1088 aa	Known RBP	13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	STX8	Q9UNK0	236 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	DCHS1	Q96JQ0	3298 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	PLIN4	Q96Q06	1357 aa		13.93	□□□□□ -0.18
CLK3-222	ENST00000568232	LINC01565	O15544	149 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	CSPG5	O95196	566 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	VCP	P55072	806 aa	Known RBP	13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	PTK7	Q13308	1070 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	HIC1	Q14526	733 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	CCDC62	Q6P9F0	684 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	RNF207	Q6ZRF8	634 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	FBXL6	Q8N531	539 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	ATOH1	Q92858	354 aa	Predicted RBP	13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	YME1L1	Q96TA2	773 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	OSBPL7	Q9BZF2	842 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	IGFLR1	Q9H665	355 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	IL17RB	Q9NRM6	502 aa		13.92	□□□□□ -0.18
CLK3-222	ENST00000568232	TBX10	O75333	385 aa		13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	RPS6	P62753	249 aa	Known RBP	13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	ZXDA	P98168	799 aa		13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	ARHGAP1	Q07960	439 aa		13.91	□□□□□ -0.18
CLK3-222	ENST00000568232	CCDC96	Q2M329	555 aa		13.91	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms