RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 COPS5Q92905 334 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 CUL5Q93034 780 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 GTF3C6Q969F1 213 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 RBM27Q9P2N5 1060 aaKnown RBP11.27□□□□□ -0.61
CLK3-220ENST00000567992 Q9Y3F1 56 aa11.27□□□□□ -0.61
CLK3-220ENST00000567992 LTBP2Q14767 1821 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 A0A1W2PQ45 241 aaPredicted RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 A0A1W2PQY0 241 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 SMCO2A6NFE2 343 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 KBTBD13C9JR72 458 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 DTNBO60941 627 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 C6orf222P0C671 652 aaPredicted RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 MYCLP12524 364 aaPredicted RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 CCND2P30279 289 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 ADCY7P51828 1080 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 ACLYP53396 1101 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 BEX3Q00994 111 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 ARHGAP1Q07960 439 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 SEPT14Q6ZU15 432 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 NECAB1Q8N987 351 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 ZFP91Q96JP5 570 aaPredicted RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 TBC1D32Q96NH3 1257 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 TSEN34Q9BSV6 310 aaKnown RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 HTATIP2Q9BUP3 242 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 BACH2Q9BYV9 841 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 SENP6Q9GZR1 1112 aaPredicted RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 ZMYND12Q9H0C1 365 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 DDX41Q9UJV9 622 aaKnown RBP11.26□□□□□ -0.61
CLK3-220ENST00000567992 MYH7BA7E2Y1 1941 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 STK36Q9NRP7 1315 aa11.26□□□□□ -0.61
CLK3-220ENST00000567992 SCN10AQ9Y5Y9 1956 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 MOXD2PA6NHM9 499 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 DYNC1LI2O43237 492 aaPredicted RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 DEXIO95424 95 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 MYCNP04198 464 aaPredicted RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 TXNP10599 105 aaKnown RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 SEMA3FQ13275 785 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 TTLL4Q14679 1199 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 NPY5RQ15761 445 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 KCNA10Q16322 511 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 FSCN1Q16658 493 aaKnown RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 PCNX4Q63HM2 1172 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 FERMT2Q96AC1 680 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 PGBD1Q96JS3 809 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 AIFM3Q96NN9 605 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 INPP4AQ96PE3 977 aaPredicted RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 SLKQ9H2G2 1235 aaPredicted RBP11.25□□□□□ -0.61
CLK3-220ENST00000567992 TMEM260Q9NX78 707 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 VPS54Q9P1Q0 977 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 PCDHA6Q9UN73 950 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 PCDHA8Q9Y5H6 950 aa11.25□□□□□ -0.61
CLK3-220ENST00000567992 SPDYE3A6NKU9 549 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 CPLX1O14810 134 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 NKRFO15226 690 aaKnown RBP eCLIP11.24□□□□□ -0.61
CLK3-220ENST00000567992 ASGR1P07306 291 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 FDPSP14324 419 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 UBA1P22314 1058 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 ICAM3P32942 547 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 ATN1P54259 1190 aaPredicted RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 AKAP17AQ02040 695 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 SP2Q02086 613 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 SSRP1Q08945 709 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 LY6KQ17RY6 165 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 GNASQ5JWF2 1037 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 C1orf53Q5VUE5 145 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 XRRA1Q6P2D8 792 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 SLC39A5Q6ZMH5 540 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 TRIM22Q8IYM9 498 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 PCSK9Q8NBP7 692 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 NSUN7Q8NE18 718 aaKnown RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 OR6J1Q8NGC5 347 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 CRYGNQ8WXF5 182 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 EMID1Q96A84 441 aaPredicted RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 ANO3Q9BYT9 981 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 GLT8D2Q9H1C3 349 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 SPC25Q9HBM1 224 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 SH3GLB2Q9NR46 395 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 RNF216Q9NWF9 866 aaPredicted RBP11.24□□□□□ -0.61
CLK3-220ENST00000567992 MRVI1Q9Y6F6 885 aa11.24□□□□□ -0.61
CLK3-220ENST00000567992 A6NJR5 290 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 STAM2O75886 525 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 CDKL5O76039 1030 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 ITGB5P18084 799 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 SREBF1P36956 1147 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 RTP1P59025 263 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 AP3B2Q13367 1082 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 RABEP1Q15276 862 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 CPLX2Q6PUV4 134 aaKnown RBP11.23□□□□□ -0.61
CLK3-220ENST00000567992 C7orf61Q8IZ16 206 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 CCDC148Q8NFR7 591 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 CCDC12Q8WUD4 166 aaPredicted RBP11.23□□□□□ -0.61
CLK3-220ENST00000567992 DPF3Q92784 378 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 AP5M1Q9H0R1 490 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 BCAS3Q9H6U6 928 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 RTEL1Q9NZ71 1219 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 PCDH10Q9P2E7 1040 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 LIMCH1Q9UPQ0 1083 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 UBIAD1Q9Y5Z9 338 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 GRIN2DO15399 1336 aa11.23□□□□□ -0.61
CLK3-220ENST00000567992 SPATA31C2B4DYI2 1134 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms