RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 OPLAHO14841 1288 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 CFBP00751 764 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 EIF2AK2P19525 551 aaKnown RBP17.39■□□□□ 0.37
CLN3-228ENST00000567804 CHMP4BP1P59074 171 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 GHRHRQ02643 423 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 CCDC85BQ15834 202 aaPredicted RBP17.39■□□□□ 0.37
CLN3-228ENST00000567804 PTGISQ16647 500 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 ARHGEF16Q5VV41 709 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 CHST3Q7LGC8 479 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 SESTD1Q86VW0 696 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 ATXN2LQ8WWM7 1075 aaKnown RBP17.39■□□□□ 0.37
CLN3-228ENST00000567804 KAT2BQ92831 832 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 CTAGE1Q96RT6 745 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 SLC9A7Q96T83 725 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 AMNQ9BXJ7 453 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 DDX41Q9UJV9 622 aaKnown RBP17.39■□□□□ 0.37
CLN3-228ENST00000567804 DOCK5Q9H7D0 1870 aa17.39■□□□□ 0.37
CLN3-228ENST00000567804 EIF3JO75822 258 aaKnown RBP17.38■□□□□ 0.37
CLN3-228ENST00000567804 NR3C2P08235 984 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 CASTP20810 708 aaKnown RBP17.38■□□□□ 0.37
CLN3-228ENST00000567804 HSD17B4P51659 736 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 TMEM67Q5HYA8 995 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 GDF6Q6KF10 455 aaPredicted RBP17.38■□□□□ 0.37
CLN3-228ENST00000567804 CYB5R4Q7L1T6 521 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 CCDC155Q8N6L0 562 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 CAGE1Q8TC20 777 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 EMID1Q96A84 441 aaPredicted RBP17.38■□□□□ 0.37
CLN3-228ENST00000567804 MTMR8Q96EF0 704 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 MAD2L2Q9UI95 211 aa17.38■□□□□ 0.37
CLN3-228ENST00000567804 TCF20Q9UGU0 1960 aaKnown RBP17.37■□□□□ 0.37
CLN3-228ENST00000567804 KLRF2D3W0D1 207 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 PPP1R11O60927 126 aaPredicted RBP17.37■□□□□ 0.37
CLN3-228ENST00000567804 CA3P07451 260 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 GSPT1P15170 499 aaKnown RBP17.37■□□□□ 0.37
CLN3-228ENST00000567804 PDE4AP27815 886 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 DGKDQ16760 1214 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 PHOSPHO2Q8TCD6 241 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 AFAP1L1Q8TED9 768 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 FTOQ9C0B1 505 aaKnown RBP eCLIP17.37■□□□□ 0.37
CLN3-228ENST00000567804 MRVI1Q9Y6F6 885 aa17.37■□□□□ 0.37
CLN3-228ENST00000567804 PRRC2BQ5JSZ5 2229 aaKnown RBP17.37■□□□□ 0.37
CLN3-228ENST00000567804 PALM3A6NDB9 673 aaPredicted RBP17.36■□□□□ 0.37
CLN3-228ENST00000567804 ZBTB5O15062 677 aa17.36■□□□□ 0.37
CLN3-228ENST00000567804 TTC22Q5TAA0 569 aa17.36■□□□□ 0.37
CLN3-228ENST00000567804 DHX38Q92620 1227 aaKnown RBP17.36■□□□□ 0.37
CLN3-228ENST00000567804 ASB2Q96Q27 587 aa17.36■□□□□ 0.37
CLN3-228ENST00000567804 PDCD2LQ9BRP1 358 aa17.36■□□□□ 0.37
CLN3-228ENST00000567804 MAP3K20Q9NYL2 800 aaKnown RBP17.36■□□□□ 0.37
CLN3-228ENST00000567804 GTF2IRD1Q9UHL9 959 aa17.36■□□□□ 0.37
CLN3-228ENST00000567804 SUPT16HQ9Y5B9 1047 aaKnown RBP17.36■□□□□ 0.37
CLN3-228ENST00000567804 NCOR1O75376 2440 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 BAIAP3O94812 1187 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 PSEN2P49810 448 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 RBL2Q08999 1139 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 TRDNQ13061 729 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 LAMC2Q13753 1193 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 STOX1Q6ZVD7 989 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 HERC6Q8IVU3 1022 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 PPTC7Q8NI37 304 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 KATNAL1Q9BW62 490 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 HDAC6Q9UBN7 1215 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 PCDHA1Q9Y5I3 950 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 MICAL3Q7RTP6 2002 aa17.35■□□□□ 0.37
CLN3-228ENST00000567804 XIRP2A4UGR9 3374 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 HAS3O00219 553 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 TNFRSF10AO00220 468 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 RGS20O76081 388 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 F2P00734 622 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 CYP21A2P08686 494 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 ZNF286BP0CG31 522 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 MYCLP12524 364 aaPredicted RBP17.34■□□□□ 0.37
CLN3-228ENST00000567804 HOXD8P13378 290 aaPredicted RBP17.34■□□□□ 0.37
CLN3-228ENST00000567804 SIP14410 1827 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 SELPP16109 830 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 MRPS5P82675 430 aaKnown RBP17.34■□□□□ 0.37
CLN3-228ENST00000567804 GRM4Q14833 912 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 GPNMBQ14956 572 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 SLC35G1Q2M3R5 365 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 LRRC8DQ7L1W4 858 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 HOMER1Q86YM7 354 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 DHX37Q8IY37 1157 aaKnown RBP17.34■□□□□ 0.37
CLN3-228ENST00000567804 SAMD3Q8N6K7 520 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 C7orf31Q8N865 590 aa17.34■□□□□ 0.37
CLN3-228ENST00000567804 RFXAPO00287 272 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 ARHGEF15O94989 841 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 POU3F3P20264 500 aaPredicted RBP17.33■□□□□ 0.36
CLN3-228ENST00000567804 HOXA13P31271 388 aaPredicted RBP17.33■□□□□ 0.36
CLN3-228ENST00000567804 PTH1RQ03431 593 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 TAP1Q03518 808 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 MFSD10Q14728 455 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 PGM5Q15124 567 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 KIAA0753Q2KHM9 967 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 MYSM1Q5VVJ2 828 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 VSIG10LQ86VR7 867 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 MICALL1Q8N3F8 863 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 IL31RAQ8NI17 732 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 PIGSQ96S52 555 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 ALG1Q9BT22 464 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 RIOX1Q9H6W3 641 aa17.33■□□□□ 0.36
CLN3-228ENST00000567804 CERS4Q9HA82 394 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms