RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 PCDHA4Q9UN74 947 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 FAN1Q9Y2M0 1017 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 SAR1BQ9Y6B6 198 aa14.76□□□□□ -0.05
VPS4A-204ENST00000566354 TRIM49BA6NDI0 452 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 N4BP1O75113 896 aaKnown RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 IVLP07476 585 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RASA1P20936 1047 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 USP14P54578 494 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 CCDC122Q5T0U0 273 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RBM26Q5T8P6 1007 aaKnown RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 PAPD7Q5XG87 772 aaKnown RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 CCDC102AQ96A19 550 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 ZNF70Q9UC06 446 aaPredicted RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 SIPA1L1O43166 1804 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 TCP10L2B9ZVM9 353 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 WNT10BO00744 389 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 ADAMTS3O15072 1205 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 KRT86O43790 486 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RPS6KA5O75582 802 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RHOBTB3O94955 611 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RPS12P25398 132 aaKnown RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 GABPAQ06546 454 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 MEA1Q16626 185 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 MAP9Q49MG5 647 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 NAALADL2Q58DX5 795 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 WDR59Q6PJI9 974 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 ZSCAN29Q8IWY8 852 aaPredicted RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 MICALL2Q8IY33 904 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 RETREG2Q8NC44 543 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 GIMAP8Q8ND71 665 aaPredicted RBP14.75□□□□□ -0.05
VPS4A-204ENST00000566354 NUP58Q9BVL2 599 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 TRIM10Q9UDY6 481 aa14.75□□□□□ -0.05
VPS4A-204ENST00000566354 BAZ2BQ9UIF8 2168 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 PES1O00541 588 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 UBA7P41226 1012 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 NT5C2P49902 561 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 PMS1P54277 932 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 HERVK_113P62684 666 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 RCSD1Q6JBY9 416 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 ZNF444Q8N0Y2 327 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 MTMR14Q8NCE2 650 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 RASSF8Q8NHQ8 419 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 DHTKD1Q96HY7 919 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 ZBED3Q96IU2 234 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 TRIM47Q96LD4 638 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 TRERF1Q96PN7 1200 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CCSER1Q9C0I3 900 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 KBTBD4Q9NVX7 518 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 RNF181Q9P0P0 153 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CNOT7Q9UIV1 285 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 SERPINB13Q9UIV8 391 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CCDC194A0A1B0GVG4 234 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 TARSL2A2RTX5 802 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 FAM196BA6NMK8 535 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 LRRIQ3A6PVS8 624 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 KLRC4O43908 158 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CYLC1P35663 651 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 ZNF280AP59817 542 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CKAP4Q07065 602 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 SPDYE2Q495Y8 402 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 SAMD7Q7Z3H4 446 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 CCDC170Q8IYT3 715 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 KAT14Q9H8E8 782 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 VEZTQ9HBM0 779 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 IL17RBQ9NRM6 502 aa14.74□□□□□ -0.05
VPS4A-204ENST00000566354 ZNHIT6Q9NWK9 470 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 FEZ2Q9UHY8 353 aaPredicted RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 SCAF8Q9UPN6 1271 aaKnown RBP14.74□□□□□ -0.05
VPS4A-204ENST00000566354 M0R2N6 131 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 LAD1O00515 517 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 ENC1O14682 589 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 GALNT17Q6IS24 598 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 TTI2Q6NXR4 508 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 KIAA1328Q86T90 577 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 DGKHQ86XP1 1220 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 EGFL6Q8IUX8 553 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 TMOD2Q9NZR1 351 aa14.73□□□□□ -0.05
VPS4A-204ENST00000566354 IPO7O95373 1038 aaKnown RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 ATP1A1P05023 1023 aaKnown RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 HLA-DOAP06340 250 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 TSPY3P0CV98 308 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 TSPY8P0CW00 308 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 AARSP49588 968 aaKnown RBP eCLIP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 GNAQP50148 359 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 TBC1D10BQ4KMP7 808 aaPredicted RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 MMS19Q96T76 1030 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 TUBGCP2Q9BSJ2 902 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 CUEDC2Q9H467 287 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 DNAJC18Q9H819 358 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 MAGEF1Q9HAY2 307 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 ZNF287Q9HBT7 754 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 EXOC1Q9NV70 894 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 HDAC6Q9UBN7 1215 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 EIF3CLB5ME19 914 aaKnown RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 ENTPD3O75355 529 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 PRPHP41219 470 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 JAKMIP2Q96AA8 810 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 EIF3CQ99613 913 aaKnown RBP14.72□□□□□ -0.05
VPS4A-204ENST00000566354 TTYH3Q9C0H2 523 aa14.72□□□□□ -0.05
VPS4A-204ENST00000566354 DHX36Q9H2U1 1008 aaKnown RBP14.72□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms