RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 PGM5Q15124 567 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 LRIT3Q3SXY7 679 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 Q7L0L9 218 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 SMARCC2Q8TAQ2 1214 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 AFG1LQ8WV93 481 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 MAP3K14Q99558 947 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 LZTS2Q9BRK4 669 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 PDCD2LQ9BRP1 358 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 MTG1Q9BT17 334 aaPredicted RBP15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 MAF1Q9H063 256 aa15.74■□□□□ 0.11
VPS9D1-204ENST00000565023 B4GALT4O60513 344 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 EIF3JO75822 258 aaKnown RBP15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 TIMP1P01033 207 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 CYP2C18P33260 490 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 KRT32Q14532 448 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 TSGA10IPQ3SY00 556 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 CCDC62Q6P9F0 684 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 USP17L6PQ6QN14 398 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 DHX32Q7L7V1 743 aaKnown RBP15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 FANCBQ8NB91 859 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 JAKMIP1Q96N16 626 aaKnown RBP15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 BRPF3Q9ULD4 1205 aa15.73■□□□□ 0.11
VPS9D1-204ENST00000565023 UMODL1Q5DID0 1318 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 EYSQ5T1H1 3165 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 KLF18A0A0U1RQI7 1052 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 CD4P01730 458 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 MMP3P08254 477 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 ACRP10323 421 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 CSF2RAP15509 400 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 CCND2P30279 289 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 CCL23P55773 120 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 EXOSC10Q01780 885 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 GHRHRQ02643 423 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 ARHGAP1Q07960 439 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 NBPF20Q3BBV1 942 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 APOA5Q6Q788 366 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 TMTC3Q6ZXV5 915 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 SLC43A3Q8NBI5 491 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 GPKOWQ92917 476 aaPredicted RBP eCLIP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 KCNB2Q92953 911 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 CUL5Q93034 780 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 RNPC3Q96LT9 517 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 TRMT13Q9NUP7 481 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 MAP3K20Q9NYL2 800 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 RTEL1Q9NZ71 1219 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 DDX41Q9UJV9 622 aaKnown RBP15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 SCN10AQ9Y5Y9 1956 aa15.72■□□□□ 0.11
VPS9D1-204ENST00000565023 LAMA2P24043 3122 aaKnown RBP15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 GOLGA8AA7E2F4 631 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 GOLGA8BA8MQT2 603 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 ZBTB43O43298 467 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 CYP2C9P11712 490 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 HSPA4P34932 840 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 RTN1Q16799 776 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 MFSD5Q6N075 450 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 HEATR3Q7Z4Q2 680 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 SGMS1Q86VZ5 419 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 DHX37Q8IY37 1157 aaKnown RBP15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 FAM161BQ96MY7 647 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 ALDH8A1Q9H2A2 487 aaPredicted RBP15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 HIPK3Q9H422 1215 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 SNX14Q9Y5W7 946 aa15.71■□□□□ 0.11
VPS9D1-204ENST00000565023 A6NJR5 290 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 RGS20O76081 388 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 SMARCA1P28370 1054 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 APOBRQ0VD83 1088 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 UBE2SQ16763 222 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 BLOC1S2Q6QNY1 142 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 Q6ZUG5 572 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 VSIG10LQ86VR7 867 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 TMEM199Q8N511 208 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 DEFB123Q8N688 67 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 SAMD3Q8N6K7 520 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 BUD13Q9BRD0 619 aaKnown RBP eCLIP15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 ALG1Q9BT22 464 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 SCN5AQ14524 2016 aa15.7■□□□□ 0.1
VPS9D1-204ENST00000565023 CNTNAP5Q8WYK1 1306 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 TRIP12Q14669 1992 aaPredicted RBP15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 KPNA6O60684 536 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 GGPS1O95749 300 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 ZNF286BP0CG31 522 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 PPIGQ13427 754 aaKnown RBP eCLIP15.69■□□□□ 0.12e-6■■■□□ 14.6
VPS9D1-204ENST00000565023 SCLYQ96I15 445 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 USP26Q9BXU7 913 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 RBM28Q9NW13 759 aaKnown RBP15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 NOD1Q9Y239 953 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 GTF3C3Q9Y5Q9 886 aa15.69■□□□□ 0.1
VPS9D1-204ENST00000565023 PRUNE2Q8WUY3 3088 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 MEIS2O14770 477 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 HMGB1P09429 215 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 CASTP20810 708 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 UBA1P22314 1058 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 SP2Q02086 613 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 LAMC2Q13753 1193 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 BRF1Q92994 677 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 SPATA33Q96N06 139 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 NOC4LQ9BVI4 516 aaKnown RBP15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 PSTPIP2Q9H939 334 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 MLXIPQ9HAP2 919 aa15.68■□□□□ 0.1
VPS9D1-204ENST00000565023 MUC3AQ02505 3323 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms