RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 IL25Q9H293 177 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 CTNNA3Q9UI47 895 aa19.67■□□□□ 0.74
CLN3-211ENST00000564091 ARHGEF15O94989 841 aa19.66■□□□□ 0.74
CLN3-211ENST00000564091 CFBP00751 764 aa19.66■□□□□ 0.74
CLN3-211ENST00000564091 CASTP20810 708 aaKnown RBP19.66■□□□□ 0.74
CLN3-211ENST00000564091 IFIT1BQ5T764 474 aaKnown RBP19.66■□□□□ 0.74
CLN3-211ENST00000564091 PHOSPHO2Q8TCD6 241 aa19.66■□□□□ 0.74
CLN3-211ENST00000564091 ADAMTS19Q8TE59 1207 aa19.66■□□□□ 0.74
CLN3-211ENST00000564091 SLC9A7Q96T83 725 aa19.66■□□□□ 0.74
CLN3-211ENST00000564091 DDX41Q9UJV9 622 aaKnown RBP19.66■□□□□ 0.74
CLN3-211ENST00000564091 EPOPA6NHQ4 379 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 OPLAHO14841 1288 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 EIF3JO75822 258 aaKnown RBP19.65■□□□□ 0.74
CLN3-211ENST00000564091 NR3C2P08235 984 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 GPNMBQ14956 572 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 HERC6Q8IVU3 1022 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 DHX38Q92620 1227 aaKnown RBP19.65■□□□□ 0.74
CLN3-211ENST00000564091 PXMP2Q9NR77 195 aa19.65■□□□□ 0.74
CLN3-211ENST00000564091 KLRF2D3W0D1 207 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 PPP1R11O60927 126 aaPredicted RBP19.64■□□□□ 0.73
CLN3-211ENST00000564091 DGKDQ16760 1214 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 CYB5R4Q7L1T6 521 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 SESTD1Q86VW0 696 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 CAGE1Q8TC20 777 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 AFAP1L1Q8TED9 768 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 ARNTL2Q8WYA1 636 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 ALG1Q9BT22 464 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 AMNQ9BXJ7 453 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 CNNM2Q9H8M5 875 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 HDAC6Q9UBN7 1215 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 MRVI1Q9Y6F6 885 aa19.64■□□□□ 0.73
CLN3-211ENST00000564091 KIF28PB7ZC32 967 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 SORBS3O60504 671 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 SELPP16109 830 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 PSEN2P49810 448 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 TAP1Q03518 808 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 SEC23AQ15436 765 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 SKIV2LQ15477 1246 aaKnown RBP19.63■□□□□ 0.73
CLN3-211ENST00000564091 KRT40Q6A162 431 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 SPRED2Q7Z698 418 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 TMCO2Q7Z6W1 182 aaPredicted RBP19.63■□□□□ 0.73
CLN3-211ENST00000564091 CCDC155Q8N6L0 562 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 C7orf31Q8N865 590 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 UHRF1Q96T88 793 aaPredicted RBP19.63■□□□□ 0.73
CLN3-211ENST00000564091 GTF2IRD1Q9UHL9 959 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 MTCH2Q9Y6C9 303 aa19.63■□□□□ 0.73
CLN3-211ENST00000564091 RGS20O76081 388 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 ZNF286BP0CG31 522 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 MYCLP12524 364 aaPredicted RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 HOXA13P31271 388 aaPredicted RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 HSD17B4P51659 736 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 TFF2Q03403 129 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 LAMC2Q13753 1193 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 SLC35G1Q2M3R5 365 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 LRRC8DQ7L1W4 858 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 DHX37Q8IY37 1157 aaKnown RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 IL27Q8NEV9 243 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 EMID1Q96A84 441 aaPredicted RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 MTMR8Q96EF0 704 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 ZFP91Q96JP5 570 aaPredicted RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 PDCD2LQ9BRP1 358 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 TSPYL2Q9H2G4 693 aaPredicted RBP19.62■□□□□ 0.73
CLN3-211ENST00000564091 MAD2L2Q9UI95 211 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 PCDHA1Q9Y5I3 950 aa19.62■□□□□ 0.73
CLN3-211ENST00000564091 SCN10AQ9Y5Y9 1956 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 ZBTB5O15062 677 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 GTPBP6O43824 516 aaPredicted RBP19.61■□□□□ 0.73
CLN3-211ENST00000564091 NBNO60934 754 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 BAIAP3O94812 1187 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 KCNJ6P48051 423 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 WDR5P61964 334 aaKnown RBP19.61■□□□□ 0.73
CLN3-211ENST00000564091 MFSD10Q14728 455 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 KIAA0753Q2KHM9 967 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 TCTN1Q2MV58 587 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 HOMER1Q86YM7 354 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 PPTC7Q8NI37 304 aa19.61■□□□□ 0.73
CLN3-211ENST00000564091 NECAB3Q96P71 396 aaPredicted RBP19.61■□□□□ 0.73
CLN3-211ENST00000564091 LCHNA4D1U4 455 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 PALM3A6NDB9 673 aaPredicted RBP19.6■□□□□ 0.73
CLN3-211ENST00000564091 TLL1O43897 1013 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 CKBP12277 381 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 POU3F3P20264 500 aaPredicted RBP19.6■□□□□ 0.73
CLN3-211ENST00000564091 PDE4AP27815 886 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 ZNF200P98182 395 aaPredicted RBP19.6■□□□□ 0.73
CLN3-211ENST00000564091 GHRHRQ02643 423 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 STOX1Q6ZVD7 989 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 IL31RAQ8NI17 732 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 WNT8BQ93098 351 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 SENP2Q9HC62 589 aa19.6■□□□□ 0.73
CLN3-211ENST00000564091 HAS3O00219 553 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 F2P00734 622 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 CXCL10P02778 98 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 BMP1P13497 986 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 GSPT1P15170 499 aaKnown RBP19.59■□□□□ 0.73
CLN3-211ENST00000564091 DEFB103AP81534 67 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 HSDL1Q3SXM5 330 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 MYSM1Q5VVJ2 828 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 VSIG10LQ86VR7 867 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 SPATA33Q96N06 139 aa19.59■□□□□ 0.73
CLN3-211ENST00000564091 PIGSQ96S52 555 aa19.59■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms