RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MEIS3P2A8K0S8 358 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 ZNF891A8MT65 544 aaPredicted RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 AGRPO00253 132 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 PRODHO43272 600 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 ASLP04424 464 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 HTRA3P83110 453 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 SFSWAPQ12872 951 aaKnown RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 IDI1Q13907 227 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC9A5Q14940 896 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 FAM133BQ5BKY9 247 aaKnown RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 TMEM240Q5SV17 173 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 CHST15Q7LFX5 561 aaPredicted RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 SYT9Q86SS6 491 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 MYLK4Q86YV6 388 aaPredicted RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 CMTR2Q8IYT2 770 aaKnown RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 GRIN3AQ8TCU5 1115 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 TMEM87BQ96K49 555 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 PNMA5Q96PV4 448 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 ALG13Q9NP73 1137 aaKnown RBP6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 NUB1Q9Y5A7 615 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 ADAMTSL3P82987 1691 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 PTPRKQ15262 1439 aa6.16□□□□□ -1.42
VPS35P1-201ENST00000563400 WASHC2AQ641Q2 1341 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 C9IYK1 514 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 TPP1O14773 563 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 CTNND1O60716 968 aaKnown RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 IL33O95760 270 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 IFIT1P09914 478 aaKnown RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 NCAM1P13591 858 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 CAPN3P20807 821 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 ITPKAP23677 461 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 GRIK1P39086 918 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 CDK8P49336 464 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 SUMO1P63165 101 aaKnown RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 G3BP1Q13283 466 aaKnown RBP eCLIP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 HSP90AA2PQ14568 343 aaPredicted RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 ZNF267Q14586 743 aaPredicted RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 LLGL1Q15334 1064 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 TAF11Q15544 211 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 DUSP27Q5VZP5 1158 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 CDCA2Q69YH5 1023 aaPredicted RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 C1orf229Q6ZS94 237 aaPredicted RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 NXPE1Q8N323 547 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 C1orf162Q8NEQ5 155 aaPredicted RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 OR2W6PQ8NHA6 318 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC35G2Q8TBE7 412 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 STK35Q8TDR2 534 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 OSBP2Q969R2 916 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 GAL3ST3Q96A11 431 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 FAXDC2Q96IV6 333 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 HHIPQ96QV1 700 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 TSPAN18Q96SJ8 248 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 OSMRQ99650 979 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 SMOC1Q9H4F8 434 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 PHAXQ9H814 394 aaKnown RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 BLOC1S4Q9NUP1 217 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 NOP53Q9NZM5 478 aaKnown RBP6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 SLC12A7Q9Y666 1083 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 A2ML1A8K2U0 1454 aa6.15□□□□□ -1.42
VPS35P1-201ENST00000563400 ELOA3CA0A087WX78 387 aaPredicted RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 LRRC10BA6NIK2 292 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ELOA3DA6NLF2 546 aaPredicted RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 M0R3H8 397 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 GNB5O14775 395 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 AP1G1O43747 822 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA12O60330 932 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 TLR5O60602 858 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 MBD4O95243 580 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PABPC1P11940 636 aaKnown RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ADCYAP1R1P41586 468 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 SCNN1BP51168 640 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 SLC7A5Q01650 507 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 RPL6Q02878 288 aaKnown RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ELOA3BQ3SY89 546 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 GNPTABQ3T906 1256 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 AGAP9Q5VTM2 703 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PGM2L1Q6PCE3 622 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 MPRIPQ6WCQ1 1025 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 CHSY3Q70JA7 882 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 TBC1D1Q86TI0 1168 aaPredicted RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 CHCHD4Q8N4Q1 142 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 SPATA5Q8NB90 893 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 NAXEQ8NCW5 288 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 GIMAP8Q8ND71 665 aaPredicted RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 GSTCDQ8NEC7 633 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ELOA3Q8NG57 546 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 NSUN6Q8TEA1 469 aaKnown RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 CCDC138Q96M89 665 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 TAAR9Q96RI9 348 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 SLC9A7Q96T83 725 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 ZFYVE1Q9HBF4 777 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PDLIM7Q9NR12 457 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 C1orf112Q9NSG2 853 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 FAM86C1Q9NVL1 165 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 TPCN1Q9ULQ1 816 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 AFG3L2Q9Y4W6 797 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGB6Q9Y5F9 930 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA9Q9Y5G4 932 aaKnown RBP6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA8Q9Y5G5 932 aa6.15□□□□□ -1.43
VPS35P1-201ENST00000563400 PCDHGA7Q9Y5G6 932 aa6.15□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms