RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 CCNT1O60563 726 aaKnown RBP18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CYP3A7P24462 503 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 FLT3LGP49771 235 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 PWP2Q15269 919 aaKnown RBP18.86■□□□□ 0.61
VPS4A-202ENST00000562754 ZNF174Q15697 407 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CCL14Q16627 93 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 XRRA1Q6P2D8 792 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CYP2W1Q8TAV3 490 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 LENG9Q96B70 501 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 ZNF396Q96N95 335 aaPredicted RBP18.86■□□□□ 0.61
VPS4A-202ENST00000562754 FLRT1Q9NZU1 646 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 TFIP11Q9UBB9 837 aaKnown RBP18.86■□□□□ 0.61
VPS4A-202ENST00000562754 SRRDQ9UH36 339 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 UBIAD1Q9Y5Z9 338 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CLIC4Q9Y696 253 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 CEP350Q5VT06 3117 aa18.86■□□□□ 0.61
VPS4A-202ENST00000562754 FOXN1O15353 648 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 HSPA8P11142 646 aaKnown RBP18.85■□□□□ 0.61
VPS4A-202ENST00000562754 GCFC2P16383 781 aaKnown RBP18.85■□□□□ 0.61
VPS4A-202ENST00000562754 ITGB5P18084 799 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 MCM7P33993 719 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 NASPP49321 788 aaPredicted RBP18.85■□□□□ 0.61
VPS4A-202ENST00000562754 PDE4DQ08499 809 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 ANO1Q5XXA6 986 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 PPP4R3AQ6IN85 833 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 MAMDC4Q6UXC1 1216 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 ARMCX2Q7L311 632 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 SLC5A4Q9NY91 659 aa18.85■□□□□ 0.61
VPS4A-202ENST00000562754 ASB14A6NK59 587 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 RGS20O76081 388 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 IGHA2P01877 340 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 HSPA1AP0DMV8 641 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 HSPA1BP0DMV9 641 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 ZNF76P36508 570 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 CEBPZQ03701 1054 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 PTPAQ15257 358 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 SF3A1Q15459 793 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 STXBP2Q15833 593 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 CEP55Q53EZ4 464 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 PRR16Q569H4 304 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 POTEDQ86YR6 584 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 INPP4AQ96PE3 977 aaPredicted RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 NAP1L4Q99733 375 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 MXRA8Q9BRK3 442 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 TMEM60Q9H2L4 133 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 POLR3EQ9NVU0 708 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 RTEL1Q9NZ71 1219 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 DDX25Q9UHL0 483 aaKnown RBP18.84■□□□□ 0.61
VPS4A-202ENST00000562754 CNPY2Q9Y2B0 182 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 MRVI1Q9Y6F6 885 aa18.84■□□□□ 0.61
VPS4A-202ENST00000562754 MEIS1O00470 390 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 NEMFO60524 1076 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 GNRH1P01148 92 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 XRCC5P13010 732 aaKnown RBP18.83■□□□□ 0.6
VPS4A-202ENST00000562754 KRT85P78386 507 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 SEMA3FQ13275 785 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 ORC2Q13416 577 aaPredicted RBP18.83■□□□□ 0.6
VPS4A-202ENST00000562754 Q4G0T1 1027 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 OLFML2BQ68BL8 750 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 ATL3Q6DD88 541 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 PLA2G4DQ86XP0 818 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 C4orf32Q8N8J7 132 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 TINF2Q9BSI4 451 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 KATNBL1Q9H079 304 aa18.83■□□□□ 0.6
VPS4A-202ENST00000562754 CDKN2AIPQ9NXV6 580 aaPredicted RBP18.83■□□□□ 0.6
VPS4A-202ENST00000562754 SYNGAP1Q96PV0 1343 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 B4DLN1 442 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 EIF3JO75822 258 aaKnown RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 STAM2O75886 525 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 BAG4O95429 457 aaKnown RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 SNAI1O95863 264 aaPredicted RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 ARP10275 920 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 NCLP19338 710 aaKnown RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 IRF5Q13568 498 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 EEPD1Q7L9B9 569 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 OTOP1Q7RTM1 612 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 NIPA1Q7RTP0 329 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 FBXO16Q8IX29 292 aaPredicted RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 MSL3Q8N5Y2 521 aaKnown RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 TRIB2Q92519 343 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 MPHOSPH6Q99547 160 aaKnown RBP18.82■□□□□ 0.6
VPS4A-202ENST00000562754 WDR11Q9BZH6 1224 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 JADE2Q9NQC1 790 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 DOCK5Q9H7D0 1870 aa18.82■□□□□ 0.6
VPS4A-202ENST00000562754 FIBPO43427 364 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 YEATS4O95619 227 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 HOXD10P28358 340 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 ATP2C1P98194 919 aaPredicted RBP18.81■□□□□ 0.6
VPS4A-202ENST00000562754 SETQ01105 290 aaPredicted RBP18.81■□□□□ 0.6
VPS4A-202ENST00000562754 PTGDRQ13258 359 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 CLEC17AQ6ZS10 378 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 LINC00301Q8NCQ3 95 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 ETNPPLQ8TBG4 499 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 GPRASP2Q96D09 838 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 UIMC1Q96RL1 719 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 GDPD2Q9HCC8 539 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 KCNMB3Q9NPA1 279 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 PCNTO95613 3336 aa18.81■□□□□ 0.6
VPS4A-202ENST00000562754 MSH4O15457 936 aa18.8■□□□□ 0.6
VPS4A-202ENST00000562754 CYP2C19P33261 490 aa18.8■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms