RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 C6orf222P0C671 652 aaPredicted RBP5.02□□□□□ -1.61
VPS35-203ENST00000562420 FBLN1P23142 703 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 TACR1P25103 407 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 SRSF3P84103 164 aaKnown RBP5.02□□□□□ -1.61
VPS35-203ENST00000562420 BMS1Q14692 1282 aaKnown RBP5.02□□□□□ -1.61
VPS35-203ENST00000562420 TRIM61Q5EBN2 209 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 EMC4Q5J8M3 183 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 USP53Q70EK8 1073 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 TMEM169Q96HH4 297 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 CDIP1Q9H305 208 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 EPB41L1Q9H4G0 881 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 ZSWIM4Q9H7M6 989 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 SIRT5Q9NXA8 310 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 ZNF652Q9Y2D9 606 aa5.02□□□□□ -1.61
VPS35-203ENST00000562420 COA3Q9Y2R0 106 aaPredicted RBP5.02□□□□□ -1.61
VPS35-203ENST00000562420 MRPS23Q9Y3D9 190 aaKnown RBP5.02□□□□□ -1.61
VPS35-203ENST00000562420 KRTAP9-7A8MTY7 169 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 IRS4O14654 1257 aaPredicted RBP5.01□□□□□ -1.61
VPS35-203ENST00000562420 N4BP3O15049 544 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 EFCAB14O75071 495 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 FUCA1P04066 466 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 TMEM253P0C7T8 217 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 LCP1P13796 627 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 BCL6P41182 706 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 DLG4P78352 724 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 TARBP2Q15633 366 aaKnown RBP5.01□□□□□ -1.61
VPS35-203ENST00000562420 FOXB2Q5VYV0 432 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 LBX2Q6XYB7 198 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 TMC6Q7Z403 805 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 TEX2Q8IWB9 1127 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 IFNL3Q8IZI9 196 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 SYNPOQ8N3V7 929 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 USP33Q8TEY7 942 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 CPA5Q8WXQ8 436 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 TRMT2BQ96GJ1 504 aaKnown RBP5.01□□□□□ -1.61
VPS35-203ENST00000562420 MRPL4Q9BYD3 311 aaKnown RBP5.01□□□□□ -1.61
VPS35-203ENST00000562420 AP5M1Q9H0R1 490 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 CNTD2Q9H8S5 307 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 PCDHA2Q9Y5H9 948 aa5.01□□□□□ -1.61
VPS35-203ENST00000562420 F8W031 263 aaPredicted RBP5□□□□□ -1.61
VPS35-203ENST00000562420 ETV2O00321 342 aaPredicted RBP5□□□□□ -1.61
VPS35-203ENST00000562420 NTRK1P04629 796 aa5□□□□□ -1.61
VPS35-203ENST00000562420 SDHBP21912 280 aa5□□□□□ -1.61
VPS35-203ENST00000562420 IGFBP6P24592 240 aaPredicted RBP5□□□□□ -1.61
VPS35-203ENST00000562420 RAP1GAPP47736 663 aa5□□□□□ -1.61
VPS35-203ENST00000562420 CAP1Q01518 475 aa5□□□□□ -1.61
VPS35-203ENST00000562420 FAM209AQ5JX71 171 aa5□□□□□ -1.61
VPS35-203ENST00000562420 CEP68Q76N32 757 aa5□□□□□ -1.61
VPS35-203ENST00000562420 LDHDQ86WU2 507 aa5□□□□□ -1.61
VPS35-203ENST00000562420 LILRB2Q8N423 598 aa5□□□□□ -1.61
VPS35-203ENST00000562420 GSTCDQ8NEC7 633 aa5□□□□□ -1.61
VPS35-203ENST00000562420 PHOSPHO1Q8TCT1 267 aa5□□□□□ -1.61
VPS35-203ENST00000562420 MZB1Q8WU39 189 aa5□□□□□ -1.61
VPS35-203ENST00000562420 KCNN1Q92952 543 aa5□□□□□ -1.61
VPS35-203ENST00000562420 PDGFDQ9GZP0 370 aaPredicted RBP5□□□□□ -1.61
VPS35-203ENST00000562420 TMEM260Q9NX78 707 aa5□□□□□ -1.61
VPS35-203ENST00000562420 FBXL7Q9UJT9 491 aa5□□□□□ -1.61
VPS35-203ENST00000562420 PCDHA5Q9Y5H7 936 aa5□□□□□ -1.61
VPS35-203ENST00000562420 PTCH2Q9Y6C5 1203 aa5□□□□□ -1.61
VPS35-203ENST00000562420 TCAF2A6NFQ2 919 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 ARVCFO00192 962 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 MAFKO60675 156 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 DGKIO75912 1065 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 PFKLP17858 780 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 FPR2P25090 351 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 GRK2P25098 689 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 GRK3P35626 688 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 CDR1P51861 262 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 PRR5P85299 388 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 HABP4Q5JVS0 413 aaKnown RBP4.99□□□□□ -1.61
VPS35-203ENST00000562420 TMEM132EQ6IEE7 984 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 NOP9Q86U38 636 aaKnown RBP4.99□□□□□ -1.61
VPS35-203ENST00000562420 MIB1Q86YT6 1006 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 CILP2Q8IUL8 1156 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 SIGLEC10Q96LC7 697 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 ALG1Q9BT22 464 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 PCDH18Q9HCL0 1135 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 CLDND1Q9NY35 253 aa4.99□□□□□ -1.61
VPS35-203ENST00000562420 DBR1Q9UK59 544 aaKnown RBP4.99□□□□□ -1.61
VPS35-203ENST00000562420 ZC3H12DA2A288 527 aaKnown RBP4.98□□□□□ -1.61
VPS35-203ENST00000562420 FAM47E-STBD1D6RA91 191 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 PLD2O14939 933 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 HGSO14964 777 aaPredicted RBP4.98□□□□□ -1.61
VPS35-203ENST00000562420 MSCO60682 206 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 TADA3O75528 432 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 C1QTNF9P0C862 333 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 NCAM1P13591 858 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 ZNF200P98182 395 aaPredicted RBP4.98□□□□□ -1.61
VPS35-203ENST00000562420 KRTAP19-4Q3LI73 84 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 KCNT2Q6UVM3 1135 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 ATG14Q6ZNE5 492 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 AMIGO3Q86WK7 504 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 IGDCC3Q8IVU1 814 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 TTLL11Q8NHH1 800 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 PANK1Q8TE04 598 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 PPIL4Q8WUA2 492 aaKnown RBP eCLIP4.98□□□□□ -1.61
VPS35-203ENST00000562420 PIF1Q9H611 641 aa4.98□□□□□ -1.61
VPS35-203ENST00000562420 NCOA5Q9HCD5 579 aaKnown RBP4.98□□□□□ -1.61
VPS35-203ENST00000562420 NGRNQ9NPE2 291 aaKnown RBP4.98□□□□□ -1.61
VPS35-203ENST00000562420 NUB1Q9Y5A7 615 aa4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms