RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 FBXL18Q96ME1 805 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 HEXIM2Q96MH2 286 aaKnown RBP7.79□□□□□ -1.16
LRRC28-220ENST00000561253 DEPDC7Q96QD5 511 aa7.79□□□□□ -1.16
LRRC28-220ENST00000561253 DOT1LQ8TEK3 1739 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 ERVV-2B6SEH9 535 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 IGF2BP3O00425 579 aaKnown RBP eCLIP7.78□□□□□ -1.16
LRRC28-220ENST00000561253 HTATSF1O43719 755 aaKnown RBP7.78□□□□□ -1.16
LRRC28-220ENST00000561253 HSP90AB1P08238 724 aaKnown RBP7.78□□□□□ -1.16
LRRC28-220ENST00000561253 KIR3DL1P43629 444 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 FAM214BQ7L5A3 538 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 SLC51AQ86UW1 340 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 VWCEQ96DN2 955 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 CCDC113Q9H0I3 377 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 KCNH3Q9ULD8 1083 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 MSRB2Q9Y3D2 182 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 CNTNAP4Q9C0A0 1308 aa7.78□□□□□ -1.16
LRRC28-220ENST00000561253 PDPK1O15530 556 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 CPSF6Q16630 551 aaKnown RBP eCLIP7.77□□□□□ -1.17
LRRC28-220ENST00000561253 C1orf141Q5JVX7 400 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 AXDND1Q5T1B0 1012 aaPredicted RBP7.77□□□□□ -1.17
LRRC28-220ENST00000561253 HEATR6Q6AI08 1181 aaKnown RBP7.77□□□□□ -1.17
LRRC28-220ENST00000561253 EEPD1Q7L9B9 569 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 LRP10Q7Z4F1 713 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 CAMKK2Q96RR4 588 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 SLC52A2Q9HAB3 445 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 LRRC4CQ9HCJ2 640 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 SNTG2Q9NY99 539 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 LEMD3Q9Y2U8 911 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 ZNF521Q96K83 1311 aa7.77□□□□□ -1.17
LRRC28-220ENST00000561253 SCN11AQ9UI33 1791 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 APAF1O14727 1248 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 PLSCR1O15162 318 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 NAT2P11245 290 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 AUHQ13825 339 aaKnown RBP7.76□□□□□ -1.17
LRRC28-220ENST00000561253 DCTN1Q14203 1278 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 TCEAL1Q15170 157 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 NBPF9Q3BBW0 867 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 DCAF15Q66K64 600 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 MRM1Q6IN84 353 aaKnown RBP7.76□□□□□ -1.17
LRRC28-220ENST00000561253 C22orf34Q6ZV56 151 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 MCM10Q7L590 875 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 DEFB132Q7Z7B7 95 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 C7orf61Q8IZ16 206 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 MFSD4AQ8N468 514 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 HAUS7Q99871 368 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 THUMPD2Q9BTF0 503 aaKnown RBP7.76□□□□□ -1.17
LRRC28-220ENST00000561253 PNNQ9H307 717 aaKnown RBP7.76□□□□□ -1.17
LRRC28-220ENST00000561253 PIF1Q9H611 641 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 FBXL21Q9UKT6 434 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 PCDHB12Q9Y5F1 795 aa7.76□□□□□ -1.17
LRRC28-220ENST00000561253 BTAF1O14981 1849 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 HEG1Q9ULI3 1381 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 RGPD3A6NKT7 1758 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 SIPA1L3O60292 1781 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 RGPD4Q7Z3J3 1758 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 KCPQ6ZWJ8 1503 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 PRR33A8MZF0 331 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 FAM155AB1AL88 458 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 CYP26A1O43174 497 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 LRRN2O75325 713 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 ZNF865P0CJ78 1059 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 RIPK4P57078 832 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 IFRD2Q12894 506 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 RASA3Q14644 834 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 ANKRD39Q53RE8 183 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 NOP9Q86U38 636 aaKnown RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 DTWD2Q8NBA8 298 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 GBP3Q9H0R5 595 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 ASCC2Q9H1I8 757 aaPredicted RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 ASAP1Q9ULH1 1129 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 RRP7AQ9Y3A4 280 aaKnown RBP7.75□□□□□ -1.17
LRRC28-220ENST00000561253 ITGB4P16144 1822 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 MAPK8IP3Q9UPT6 1336 aa7.75□□□□□ -1.17
LRRC28-220ENST00000561253 PAPPAQ13219 1627 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 DLG5Q8TDM6 1919 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ANKRD34BA5PLL1 514 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 FAM221BA6H8Z2 402 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 SUSD5O60279 629 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 EPHX1P07099 455 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 FURINP09958 794 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ZNF853P0CG23 659 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ITIH2P19823 946 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ZNF143P52747 638 aaPredicted RBP7.74□□□□□ -1.17
LRRC28-220ENST00000561253 OXCT1P55809 520 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 RASGRF1Q13972 1273 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 MTERF2Q49AM1 385 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ADAT2Q7Z6V5 191 aaKnown RBP7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ZDHHC13Q8IUH4 622 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 FAM9BQ8IZU0 186 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 FAM181AQ8N9Y4 354 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 ST13P5Q8NFI4 369 aaPredicted RBP7.74□□□□□ -1.17
LRRC28-220ENST00000561253 Q96M66 194 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 APBA2Q99767 749 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 TMOD3Q9NYL9 352 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 PIM2Q9P1W9 311 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 CAPN6Q9Y6Q1 641 aa7.74□□□□□ -1.17
LRRC28-220ENST00000561253 PALLDQ8WX93 1383 aa7.73□□□□□ -1.17
LRRC28-220ENST00000561253 CHL1O00533 1208 aa7.73□□□□□ -1.17
LRRC28-220ENST00000561253 CBFA2T2O43439 604 aa7.73□□□□□ -1.17
LRRC28-220ENST00000561253 KCNQ3O43525 872 aa7.73□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms