RNA–Protein interactions for RNA: ENST00000561036.1

HDDC3-206, Transcript of HD domain containing 3, humanhuman

TSL 3

Gene HDDC3, Length 457 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-206ENST00000561036 LRRC27Q9C0I9 530 aa19.26■□□□□ 0.67
HDDC3-206ENST00000561036 IGLV3-22A0A075B6J6 115 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 A0A0G2JLL6 359 aaPredicted RBP19.25■□□□□ 0.67
HDDC3-206ENST00000561036 NFIBO00712 420 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 BMP6P22004 513 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 SETQ01105 290 aaPredicted RBP19.25■□□□□ 0.67
HDDC3-206ENST00000561036 GRB10Q13322 594 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 PPIL2Q13356 520 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 TMEM119Q4V9L6 283 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 NIPA1Q7RTP0 329 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 PRRT2Q7Z6L0 340 aaPredicted RBP19.25■□□□□ 0.67
HDDC3-206ENST00000561036 SNX29Q8TEQ0 813 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 TRERF1Q96PN7 1200 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 NT5C3AQ9H0P0 336 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 KCNH4Q9UQ05 1017 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 SMCHD1A6NHR9 2005 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 FRMPD4Q14CM0 1322 aa19.25■□□□□ 0.67
HDDC3-206ENST00000561036 RBBP6Q7Z6E9 1792 aaKnown RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 POTEMA6NI47 508 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 RPN1P04843 607 aaKnown RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 ERCC5P28715 1186 aaPredicted RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 HOXA7P31268 230 aaPredicted RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 MYL5Q02045 173 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 TTLL12Q14166 644 aaPredicted RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 KCNB1Q14721 858 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 CEP55Q53EZ4 464 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 LDLRAD1Q5T700 205 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 ISM2Q6H9L7 571 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 KCTD17Q8N5Z5 321 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 MB21D1Q8N884 522 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 ERMNQ8TAM6 284 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 TRIM44Q96DX7 344 aaPredicted RBP19.24■□□□□ 0.67
HDDC3-206ENST00000561036 PNMA5Q96PV4 448 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 C7orf25Q9BPX7 421 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 TEX13BQ9BXU2 312 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 ELP3Q9H9T3 547 aa19.24■□□□□ 0.67
HDDC3-206ENST00000561036 MSH4O15457 936 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 CUL4BQ13620 913 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 MUM1L1Q5H9M0 696 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 XRRA1Q6P2D8 792 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 CNNM4Q6P4Q7 775 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 SV2BQ7L1I2 683 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 PLA2G4DQ86XP0 818 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 SYTL5Q8TDW5 730 aaPredicted RBP19.23■□□□□ 0.67
HDDC3-206ENST00000561036 CCDC47Q96A33 483 aaKnown RBP19.23■□□□□ 0.67
HDDC3-206ENST00000561036 RNF146Q9NTX7 359 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 ZNF214Q9UL59 606 aaPredicted RBP19.23■□□□□ 0.67
HDDC3-206ENST00000561036 LOC285556D6RIA3 1793 aa19.23■□□□□ 0.67
HDDC3-206ENST00000561036 PTPRFP10586 1907 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 SPDYE16A6NNV3 312 aaPredicted RBP19.22■□□□□ 0.67
HDDC3-206ENST00000561036 MEIS1O00470 390 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 BCRP11274 1271 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 SPIRE1Q08AE8 756 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 NCAPHQ15003 741 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 PCNX4Q63HM2 1172 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 HAUS3Q68CZ6 603 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 SNRNP48Q6IEG0 339 aaKnown RBP19.22■□□□□ 0.67
HDDC3-206ENST00000561036 RNF207Q6ZRF8 634 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 ENOX1Q8TC92 643 aaKnown RBP19.22■□□□□ 0.67
HDDC3-206ENST00000561036 STAMQ92783 540 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 SLC5A5Q92911 643 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 COL20A1Q9P218 1284 aa19.22■□□□□ 0.67
HDDC3-206ENST00000561036 SOCS7O14512 581 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 AP5Z1O43299 807 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 CCT6AP40227 531 aaKnown RBP19.21■□□□□ 0.67
HDDC3-206ENST00000561036 ZNF75DP51815 510 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 PLCB2Q00722 1185 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 TMEM132BQ14DG7 1078 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 ZNF658Q5TYW1 1059 aaPredicted RBP19.21■□□□□ 0.67
HDDC3-206ENST00000561036 LBX2Q6XYB7 198 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.21■□□□□ 0.67
HDDC3-206ENST00000561036 LRRC15Q8TF66 581 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 LARP4BQ92615 738 aaKnown RBP19.21■□□□□ 0.67
HDDC3-206ENST00000561036 RAD54LQ92698 747 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 OTUD5Q96G74 571 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 WNK4Q96J92 1243 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 CLMNQ96JQ2 1002 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 PLIN2Q99541 437 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 MXRA8Q9BRK3 442 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 BLZF1Q9H2G9 400 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 HOMER2Q9NSB8 354 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 BLOC1S4Q9NUP1 217 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 VAV3Q9UKW4 847 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 CLEC11AQ9Y240 323 aa19.21■□□□□ 0.67
HDDC3-206ENST00000561036 IRF6O14896 467 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 CASP1P29466 404 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 CDC25BP30305 580 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 STAT3P40763 770 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 RPS6P62753 249 aaKnown RBP19.2■□□□□ 0.66
HDDC3-206ENST00000561036 FKBP1BP68106 108 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 PABPC4Q13310 644 aaKnown RBP eCLIP19.2■□□□□ 0.66
HDDC3-206ENST00000561036 FASTKD5Q7L8L6 764 aaKnown RBP19.2■□□□□ 0.66
HDDC3-206ENST00000561036 CHST13Q8NET6 341 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 CYP2W1Q8TAV3 490 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 CNKSR2Q8WXI2 1034 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 RIT2Q99578 217 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 WDR11Q9BZH6 1224 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 TRIM9Q9C026 710 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 TRIM5Q9C035 493 aa19.2■□□□□ 0.66
HDDC3-206ENST00000561036 ACAD9Q9H845 621 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms