RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 SYNRGQ9UMZ2 1314 aa14.9□□□□□ -0.02
NEDD8-208ENST00000560427 ADAMTS4O75173 837 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 SMPD1P17405 629 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 GJA9P57773 515 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 DAGLBQ8NCG7 672 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 WDR11Q9BZH6 1224 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 VPS54Q9P1Q0 977 aa14.89□□□□□ -0.03
NEDD8-208ENST00000560427 ORC3Q9UBD5 711 aaPredicted RBP14.89□□□□□ -0.03
NEDD8-208ENST00000560427 DDX49Q9Y6V7 483 aaKnown RBP14.89□□□□□ -0.03
NEDD8-208ENST00000560427 BRCA2P51587 3418 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 KBTBD13C9JR72 458 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 TGFB3P10600 412 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 MYCLP12524 364 aaPredicted RBP14.88□□□□□ -0.03
NEDD8-208ENST00000560427 SREBF1P36956 1147 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 NLRP5P59047 1200 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 HMGN5P82970 282 aaKnown RBP14.88□□□□□ -0.03
NEDD8-208ENST00000560427 ST3GAL1Q11201 340 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 LRRC41Q15345 812 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 NECAB2Q7Z6G3 386 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 TLK2Q86UE8 772 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 CCDC83Q8IWF9 413 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 PCSK9Q8NBP7 692 aaKnown RBP14.88□□□□□ -0.03
NEDD8-208ENST00000560427 IL31RAQ8NI17 732 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 INPP4AQ96PE3 977 aaPredicted RBP14.88□□□□□ -0.03
NEDD8-208ENST00000560427 TSEN34Q9BSV6 310 aaKnown RBP14.88□□□□□ -0.03
NEDD8-208ENST00000560427 ANO3Q9BYT9 981 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 PDGFCQ9NRA1 345 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 PCDHA4Q9UN74 947 aa14.88□□□□□ -0.03
NEDD8-208ENST00000560427 C11orf97A0A1B0GVM6 126 aaPredicted RBP14.87□□□□□ -0.03
NEDD8-208ENST00000560427 MOXD2PA6NHM9 499 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 ADCY6O43306 1168 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 PPFIA3O75145 1194 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 TXNP10599 105 aaKnown RBP14.87□□□□□ -0.03
NEDD8-208ENST00000560427 COL6A1P12109 1028 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 ICAM3P32942 547 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 MNX1P50219 401 aaPredicted RBP14.87□□□□□ -0.03
NEDD8-208ENST00000560427 ANO1Q5XXA6 986 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 CCDC62Q6P9F0 684 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 NLRX1Q86UT6 975 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 KLHDC9Q8NEP7 349 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 LENG1Q96BZ8 264 aaPredicted RBP14.87□□□□□ -0.03
NEDD8-208ENST00000560427 GPRASP2Q96D09 838 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 CDHR1Q96JP9 859 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 ALG1Q9BT22 464 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 AP5M1Q9H0R1 490 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 C11orf49Q9H6J7 331 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 PHF24Q9UPV7 400 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 MRVI1Q9Y6F6 885 aa14.87□□□□□ -0.03
NEDD8-208ENST00000560427 MAFGO15525 162 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 FIBPO43427 364 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 ZEB2O60315 1214 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 RGS20O76081 388 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 PGK1P00558 417 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 C6orf222P0C671 652 aaPredicted RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 FDPSP14324 419 aaKnown RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 MRPS9P82933 396 aaKnown RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 BRDTQ58F21 947 aaPredicted RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 SEPT14Q6ZU15 432 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 BLIDQ8IZY5 108 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 EMID1Q96A84 441 aaPredicted RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 PAWRQ96IZ0 340 aaKnown RBP14.86□□□□□ -0.03
NEDD8-208ENST00000560427 HTATIP2Q9BUP3 242 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 PHF20Q9BVI0 1012 aa14.86□□□□□ -0.03
NEDD8-208ENST00000560427 JAK2O60674 1132 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 GH1P01241 217 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 CPT1AP50416 773 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 TRIM29Q14134 588 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 FSCN1Q16658 493 aaKnown RBP14.85□□□□□ -0.03
NEDD8-208ENST00000560427 GJC2Q5T442 439 aaPredicted RBP14.85□□□□□ -0.03
NEDD8-208ENST00000560427 JAKMIP3Q5VZ66 844 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 CCSAPQ6IQ19 270 aaPredicted RBP14.85□□□□□ -0.03
NEDD8-208ENST00000560427 DIS3LQ8TF46 1054 aaKnown RBP14.85□□□□□ -0.03
NEDD8-208ENST00000560427 TMX3Q96JJ7 454 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 BRMS1Q9HCU9 246 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 DDX41Q9UJV9 622 aaKnown RBP14.85□□□□□ -0.03
NEDD8-208ENST00000560427 KIF3AQ9Y496 699 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 UBIAD1Q9Y5Z9 338 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 KIAA1217Q5T5P2 1943 aa14.85□□□□□ -0.03
NEDD8-208ENST00000560427 SPATA31C2B4DYI2 1134 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 CTAGE5O15320 804 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 DYNC1LI2O43237 492 aaPredicted RBP14.84□□□□□ -0.03
NEDD8-208ENST00000560427 CABYRO75952 493 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 ARIH2O95376 493 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 CYP3A4P08684 503 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 ARHGAP4P98171 946 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 MLLT1Q03111 559 aaPredicted RBP14.84□□□□□ -0.03
NEDD8-208ENST00000560427 NEDD9Q14511 834 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 GNASQ5JWF2 1037 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 NIPA1Q7RTP0 329 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 GIMAP8Q8ND71 665 aaPredicted RBP14.84□□□□□ -0.03
NEDD8-208ENST00000560427 OR6J1Q8NGC5 347 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 CRYGNQ8WXF5 182 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 AIFM3Q96NN9 605 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 SENP7Q9BQF6 1050 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 JADE2Q9NQC1 790 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 TMEM260Q9NX78 707 aa14.84□□□□□ -0.03
NEDD8-208ENST00000560427 A6NJR5 290 aa14.83□□□□□ -0.04
NEDD8-208ENST00000560427 M0R2N6 131 aa14.83□□□□□ -0.04
NEDD8-208ENST00000560427 KPNA6O60684 536 aa14.83□□□□□ -0.04
NEDD8-208ENST00000560427 CD2BP2O95400 341 aaKnown RBP14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms