RNA–Protein interactions for RNA: ENST00000559339.1

SNX1-205, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 101 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-205ENST00000559339 ZSWIM6Q9HCJ5 1215 aa5.03□□□□□ -1.6
SNX1-205ENST00000559339 POLR3EQ9NVU0 708 aa5.03□□□□□ -1.6
SNX1-205ENST00000559339 BRPF3Q9ULD4 1205 aa5.03□□□□□ -1.6
SNX1-205ENST00000559339 ZMYND8Q9ULU4 1186 aaPredicted RBP5.03□□□□□ -1.6
SNX1-205ENST00000559339 CIZ1Q9ULV3 898 aaPredicted RBP5.03□□□□□ -1.6
SNX1-205ENST00000559339 COLQQ9Y215 455 aaPredicted RBP5.03□□□□□ -1.6
SNX1-205ENST00000559339 MRVI1Q9Y6F6 885 aa5.03□□□□□ -1.6
SNX1-205ENST00000559339 V9GY48 417 aaPredicted RBP5.03□□□□□ -1.6
SNX1-205ENST00000559339 COL11A1P12107 1806 aaPredicted RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 PARP14Q460N5 1801 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 TNRC18O15417 2968 aaPredicted RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 CEP290O15078 2479 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 hCG_1642624A0A1W2PR95 340 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 RBM47A0AV96 593 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 MYADML2A6NDP7 307 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 ARVCFO00192 962 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 NOP56O00567 594 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 OPLAHO14841 1288 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 MAFGO15525 162 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 ADCY6O43306 1168 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 CDKL5O76039 1030 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 FOSP01100 380 aaPredicted RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 MYL3P08590 195 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 CPA1P15085 419 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 RAG1P15918 1043 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 GNA11P29992 359 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 BMP8BP34820 402 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 TLE2Q04725 743 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 APOBRQ0VD83 1088 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 ITGA7Q13683 1181 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 LAMC2Q13753 1193 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 NEDD9Q14511 834 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 PGM5Q15124 567 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 DGKDQ16760 1214 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 LY6KQ17RY6 165 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 HABP4Q5JVS0 413 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 PCNX4Q63HM2 1172 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 MCTP2Q6DN12 878 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 PPP1R18Q6NYC8 613 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 USP17L6PQ6QN14 398 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 NLRX1Q86UT6 975 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 VSIG10LQ86VR7 867 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 DHX37Q8IY37 1157 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 GIMAP8Q8ND71 665 aaPredicted RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 PPTC7Q8NI37 304 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 SPATA33Q96N06 139 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 MTG1Q9BT17 334 aaPredicted RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 KATNAL1Q9BW62 490 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 UPF3BQ9BZI7 483 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 MLXIPQ9HAP2 919 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 UPF2Q9HAU5 1272 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 PDRG1Q9NUG6 133 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 TMEM39AQ9NV64 488 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 BARHL2Q9NY43 387 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 COL20A1Q9P218 1284 aa5.02□□□□□ -1.61
SNX1-205ENST00000559339 DDX49Q9Y6V7 483 aaKnown RBP5.02□□□□□ -1.61
SNX1-205ENST00000559339 SMCO2A6NFE2 343 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 A6NJR5 290 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 MEIS2O14770 477 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 FIBPO43427 364 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 PPFIA4O75335 1185 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 MMP3P08254 477 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 SCG2P13521 617 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 XBP1P17861 261 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 PDIA3P30101 505 aaKnown RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 CDC27P30260 824 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 ADD1P35611 737 aaKnown RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 MAGEA10P43363 369 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 ADCY7P51828 1080 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 EVCP57679 992 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 CHMP4BP1P59074 171 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 PURAQ00577 322 aaKnown RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 MDM2Q00987 491 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 SSRP1Q08945 709 aaKnown RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 AP3B2Q13367 1082 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 MTMR1Q13613 665 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 COL9A3Q14050 684 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 PFKFB3Q16875 520 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 SLC35G1Q2M3R5 365 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 FAM47CQ5HY64 1035 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 CELF3Q5SZQ8 465 aaKnown RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 WWC2Q6AWC2 1192 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 NFRKBQ6P4R8 1299 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 CCDC62Q6P9F0 684 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 TDHQ8IZJ6 230 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 TMEM199Q8N511 208 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 C7orf31Q8N865 590 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 CCDC148Q8NFR7 591 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 BICD2Q8TD16 824 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 AFG1LQ8WV93 481 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 GPKOWQ92917 476 aaPredicted RBP eCLIP5.01□□□□□ -1.61
SNX1-205ENST00000559339 EMID1Q96A84 441 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 ZNF274Q96GC6 653 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 INPP4AQ96PE3 977 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 GDF15Q99988 308 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 AGXT2Q9BYV1 514 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 SLKQ9H2G2 1235 aaPredicted RBP5.01□□□□□ -1.61
SNX1-205ENST00000559339 C6orf50Q9HD87 102 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 RIC8AQ9NPQ8 531 aa5.01□□□□□ -1.61
SNX1-205ENST00000559339 PDLIM7Q9NR12 457 aa5.01□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms