RNA–Protein interactions for RNA: ENST00000559257.5

USP3-211, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 2,217 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-211ENST00000559257 ITIH4Q14624 930 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 MUM1Q2TAK8 710 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 FKBP15Q5T1M5 1219 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 IL23RQ5VWK5 629 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 EMBQ6PCB8 327 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.25□□□□□ -0.93
USP3-211ENST00000559257 PHLDB2Q86SQ0 1253 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP3-211ENST00000559257 SPOCK3Q9BQ16 436 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 ARHGEF38Q9NXL2 777 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 IL20Q9NYY1 176 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 STK39Q9UEW8 545 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 WWC3Q9ULE0 1092 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 TTF2Q9UNY4 1162 aaKnown RBP9.25□□□□□ -0.93
USP3-211ENST00000559257 LRCH1Q9Y2L9 728 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 ADGRL1O94910 1474 aa9.25□□□□□ -0.93
USP3-211ENST00000559257 PTPRTO14522 1441 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 MAGEA13PA6NCF6 341 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 SPTLC2O15270 562 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 B3GALNT1O75752 331 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ASMTLO95671 621 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CYP1A2P05177 515 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 POTEJP0CG39 1038 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CYP2C9P11712 490 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PTPN2P17706 415 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 RXRBP28702 533 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 SLC16A2P36021 539 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ETV3P41162 512 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 SERPINB4P48594 390 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ATP1A2P50993 1020 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 FANCCQ00597 558 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 AMPD2Q01433 879 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 TBX2Q13207 712 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 E2F2Q14209 437 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 KIF22Q14807 665 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CFAP58Q5T655 872 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 NCAPH2Q6IBW4 605 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 MCF2L2Q86YR7 1114 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CCDC83Q8IWF9 413 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 GOLM1Q8NBJ4 401 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PMM1Q92871 262 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CAVIN3Q969G5 261 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ABTB1Q969K4 478 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 SNF8Q96H20 258 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 C8orf48Q96LL4 319 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CDC5LQ99459 802 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 PRPF18Q99633 342 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 ABCF3Q9NUQ8 709 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 NOB1Q9ULX3 412 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 GIT1Q9Y2X7 761 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 TSC22D4Q9Y3Q8 395 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PLEKHG1Q9ULL1 1385 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ZBTB7BO15156 539 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 DIAPH1O60610 1272 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 RAB11FIP3O75154 756 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PDHA1P08559 390 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PYGMP11217 842 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 GNAT2P19087 354 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 GJB2P29033 226 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ZNF131P52739 623 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CKAP4Q07065 602 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 ARL13BQ3SXY8 428 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 RASIP1Q5U651 963 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 NXNQ6DKJ4 435 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 TOGARAM2Q6ZUX3 1019 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 FAM20CQ8IXL6 584 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 RETREG2Q8NC44 543 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 LILRB1Q8NHL6 650 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP3-211ENST00000559257 DPF3Q92784 378 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ZSCAN31Q96LW9 406 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 OLFM3Q96PB7 478 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ESYT1Q9BSJ8 1104 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 CARD14Q9BXL6 1004 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 INO80BQ9C086 356 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 SH2B1Q9NRF2 756 aaPredicted RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 TYW1Q9NV66 732 aaKnown RBP9.24□□□□□ -0.93
USP3-211ENST00000559257 IL1RAPL1Q9NZN1 696 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 ADAM22Q9P0K1 906 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PALD1Q9ULE6 856 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 PNPLA6Q8IY17 1366 aa9.24□□□□□ -0.93
USP3-211ENST00000559257 MYOM1P52179 1685 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 LOC105371267A0A1B0GV96 52 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 CBFA2T3O75081 653 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 ALDH5A1P51649 535 aaPredicted RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 GPC3P51654 580 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 TBL3Q12788 808 aaKnown RBP9.23□□□□□ -0.93
USP3-211ENST00000559257 DDB1Q16531 1140 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 CCDC102BQ68D86 513 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 FAM117BQ6P1L5 589 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 KRT27Q7Z3Y8 459 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 C11orf96Q7Z7L8 435 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP9.23□□□□□ -0.93
USP3-211ENST00000559257 SPICE1Q8N0Z3 855 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 ANKS4BQ8N8V4 417 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 SSH1Q8WYL5 1049 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 PGBD1Q96JS3 809 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 CENPKQ9BS16 269 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 NDEL1Q9GZM8 345 aa9.23□□□□□ -0.93
USP3-211ENST00000559257 BTBD7Q9P203 1132 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms