RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 HLFQ16534 295 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 NLRP14Q86W24 1093 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 CCDC197Q8NCU1 140 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 IGDCC4Q8TDY8 1250 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 PLVAPQ9BX97 442 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 IKBKGQ9Y6K9 419 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 UTYO14607 1347 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 TARSL2A2RTX5 802 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 KLRF2D3W0D1 207 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 MYO1FO00160 1098 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 ZRANB2O95218 330 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP3-210ENST00000559192 HLA-DOAP06340 250 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 CCDC63Q8NA47 563 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 RDH13Q8NBN7 331 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 LIMA1Q9UHB6 759 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 CD2APQ9Y5K6 639 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 VSIG1Q86XK7 387 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 TTLL11Q8NHH1 800 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 LARP4BQ92615 738 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 IQCGQ9H095 443 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 EHD2Q9NZN4 543 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 ZNF219Q9P2Y4 722 aaPredicted RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 BACH1O14867 736 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 EIF3HO15372 352 aaKnown RBP eCLIP7.79□□□□□ -1.16
USP3-210ENST00000559192 CTNND1O60716 968 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 CIB2O75838 187 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 ZNF131P52739 623 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 UAP1Q16222 522 aaPredicted RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 LRRC23Q53EV4 343 aaPredicted RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 HS2ST1Q7LGA3 356 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 NLRP10Q86W26 655 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 ENAHQ8N8S7 591 aaPredicted RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 HNRNPLLQ8WVV9 542 aaKnown RBP7.79□□□□□ -1.16
USP3-210ENST00000559192 HPS3Q969F9 1004 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 IL17RAQ96F46 866 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 BICD1Q96G01 975 aa7.79□□□□□ -1.16
USP3-210ENST00000559192 ANO9A1A5B4 782 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 FCER1AP12319 257 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 KRT5P13647 590 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 DESP17661 470 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 ATP5DP30049 168 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 CCDC110Q8TBZ0 833 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 DYNLL2Q96FJ2 89 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 SDAD1Q9NVU7 687 aaKnown RBP eCLIP7.78□□□□□ -1.16
USP3-210ENST00000559192 CEMIPQ8WUJ3 1361 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 HMGB1P1B2RPK0 211 aaPredicted RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 GNA14O95837 355 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 XRCC5P13010 732 aaKnown RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 PSMC4P43686 418 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 CCNI2Q6ZMN8 369 aaPredicted RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 TMTC3Q6ZXV5 915 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 LRRC47Q8N1G4 583 aaKnown RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 LRRC43Q8N309 656 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 VIPAS39Q9H9C1 493 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 SLC24A3Q9HC58 644 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 BTG4Q9NY30 223 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 CAPN11Q9UMQ6 739 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 HPSEQ9Y251 543 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 TMEM131LA2VDJ0 1609 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 GSG1L2A8MUP6 293 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 NBPF26B4DH59 902 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 PPP1R3GB7ZBB8 358 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 CYP2D6P10635 497 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 PLCB3Q01970 1234 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 NBPF10Q6P3W6 841 aaKnown RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 PACS2Q86VP3 889 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 NBPF15Q8N660 670 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 MYCT1Q8N699 235 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 SPATA4Q8NEY3 305 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 TBCKQ8TEA7 893 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 EYA3Q99504 573 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 ANKRD2Q9GZV1 360 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 DDX25Q9UHL0 483 aaKnown RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 IFT172Q9UG01 1749 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 ITIH6Q6UXX5 1313 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 RIMBP2O15034 1052 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 SERPING1P05155 500 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 PLTPP55058 493 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 COG7P83436 770 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 LLGL1Q15334 1064 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 ZKSCAN8Q15776 578 aaPredicted RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 USH1GQ495M9 461 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 HIBCHQ6NVY1 386 aaPredicted RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 SGMS1Q86VZ5 419 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 MSANTD4Q8NCY6 345 aa7.78□□□□□ -1.16
USP3-210ENST00000559192 INTS9Q9NV88 658 aaKnown RBP7.78□□□□□ -1.16
USP3-210ENST00000559192 USP17L3A6NCW0 530 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 USP17L4A6NCW7 530 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 TTC36A6NLP5 189 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 PGRMC1O00264 195 aaKnown RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 SMIM24O75264 130 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 STX2P32856 288 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 VPS41P49754 854 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 CYP2J2P51589 502 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 SESN3P58005 492 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 FAM26FQ5R3K3 315 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 USP17L1Q7RTZ2 530 aa7.77□□□□□ -1.17
USP3-210ENST00000559192 TBC1D1Q86TI0 1168 aaPredicted RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 ARHGEF2Q92974 986 aaKnown RBP7.77□□□□□ -1.17
USP3-210ENST00000559192 CPVLQ9H3G5 476 aa7.77□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms