RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 ERVV-2B6SEH9 535 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 CALM1P0DP23 149 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 CALM2P0DP24 149 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 CALM3P0DP25 149 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 KLRK1P26718 216 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 SLCO1A2P46721 670 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 ADCY1Q08828 1119 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 KLHL30Q0D2K2 578 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 PPP1R7Q15435 360 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 SV2BQ7L1I2 683 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 DZIP1Q86YF9 867 aaKnown RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 MYCBPAPQ8TBZ2 947 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 TRIM9Q9C026 710 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 PPP2R5AQ15172 486 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 CCDC152Q4G0S7 254 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 FAM133BQ5BKY9 247 aaKnown RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 DCAF17Q5H9S7 520 aaPredicted RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 USP17L2Q6R6M4 530 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 ZNF444Q8N0Y2 327 aaPredicted RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 SEMA6BQ9H3T3 888 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 FBXO3Q9UK99 471 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 ATP8A1Q9Y2Q0 1164 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 PEX19P40855 299 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 FUT2Q10981 343 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 PFKFB3Q16875 520 aaPredicted RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 SLC9C1Q4G0N8 1177 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 GIMAP8Q8ND71 665 aaPredicted RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 CELF4Q9BZC1 486 aaKnown RBP12.49□□□□□ -0.41
LDLR-208ENST00000558518 PCDHA4Q9UN74 947 aa12.49□□□□□ -0.41
LDLR-208ENST00000558518 PTGISQ16647 500 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 SFMBT2Q5VUG0 894 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MSL1Q68DK7 614 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MMGT1Q8N4V1 131 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 PYM1Q9BRP8 204 aaKnown RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 EPN3Q9H201 632 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 SLC40A1Q9NP59 571 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 AMACRQ9UHK6 382 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 BCS1LQ9Y276 419 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 CD2APQ9Y5K6 639 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MYH2Q9UKX2 1941 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 SMCO2A6NFE2 343 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 KLRC4O43908 158 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 ACTN1P12814 892 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 ABCB4P21439 1286 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MDH1P40925 334 aaKnown RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 MAGOHP61326 146 aaKnown RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 ALS2CLQ60I27 953 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 CHADLQ6NUI6 762 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 HIBCHQ6NVY1 386 aaPredicted RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 SNX29Q8TEQ0 813 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MAGOHBQ96A72 148 aaKnown RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 CRNKL1Q9BZJ0 848 aaKnown RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 MLXIPLQ9NP71 852 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 FRMPD2Q68DX3 1309 aaPredicted RBP12.48□□□□□ -0.41
LDLR-208ENST00000558518 LMO7Q8WWI1 1683 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 RGPD5Q99666 1765 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 TMEM110-MUSTN1A8MSY1 372 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 DCDC2CA8MYV0 355 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 OR52Z1P0C646 297 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 QPCTQ16769 361 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 MIIPQ5JXC2 388 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 KLHDC7AQ5VTJ3 777 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 CNNM4Q6P4Q7 775 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 CCDC25Q86WR0 208 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 ATP6V1G3Q96LB4 118 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 CEP89Q96ST8 783 aa12.48□□□□□ -0.41
LDLR-208ENST00000558518 DAPK3O43293 454 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 SHOX2O60902 331 aaPredicted RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 VIMP08670 466 aaKnown RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 AMPD3Q01432 767 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 DHX9Q08211 1270 aaKnown RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 RPS6KA1Q15418 735 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 MAPKAPK5Q8IW41 473 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 SUGP1Q8IWZ8 645 aaKnown RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 KIAA0895Q8NCT3 520 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 TBCKQ8TEA7 893 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 DHTKD1Q96HY7 919 aaPredicted RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 TSG101Q99816 390 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 YY1AP1Q9H869 796 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 SPRED3Q2MJR0 410 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 DAAM2Q86T65 1068 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 COA7Q96BR5 231 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 CYFIP2Q96F07 1278 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 FBXL5Q9UKA1 691 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 PCDHA6Q9UN73 950 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 PCDHA8Q9Y5H6 950 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 MYH6P13533 1939 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 KRIT1O00522 736 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 RHOBTB3O94955 611 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 TNNC1P63316 161 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 DIXDC1Q155Q3 683 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 MEA1Q16626 185 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 NLRP3Q96P20 1036 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 GPR101Q96P66 508 aaPredicted RBP12.47□□□□□ -0.41
LDLR-208ENST00000558518 WDR3Q9UNX4 943 aaKnown RBP eCLIP12.47□□□□□ -0.41
LDLR-208ENST00000558518 PLAGL2Q9UPG8 496 aa12.47□□□□□ -0.41
LDLR-208ENST00000558518 A0A087X0T9 212 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 NPHP3-ACAD11A0A0J9YXS1 232 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 KLRF2D3W0D1 207 aa12.46□□□□□ -0.41
LDLR-208ENST00000558518 FAM228BP0C875 321 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms