RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 PRDM4Q9UKN5 801 aa3.49□□□□□ -1.85
SLIRP-208ENST00000556956 NCOA3Q9Y6Q9 1424 aa3.49□□□□□ -1.85
SLIRP-208ENST00000556956 ABCA8O94911 1581 aa3.49□□□□□ -1.85
SLIRP-208ENST00000556956 MYO5CQ9NQX4 1742 aa3.49□□□□□ -1.85
SLIRP-208ENST00000556956 ATP10AO60312 1499 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ABCC10Q5T3U5 1492 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 PCBP3P57721 371 aaKnown RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 HMGN5P82970 282 aaKnown RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 NMIQ13287 307 aaPredicted RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 COL9A2Q14055 689 aaPredicted RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 RABEP1Q15276 862 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ZSCAN23Q3MJ62 389 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 BMP2KLQ5H9B9 411 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ATF7IPQ6VMQ6 1270 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 GK5Q6ZS86 529 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 NLRC3Q7RTR2 1065 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 SPRED1Q7Z699 444 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 USP48Q86UV5 1035 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 CHD1LQ86WJ1 897 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ITPRIPQ8IWB1 547 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ANKS4BQ8N8V4 417 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ATG4CQ96DT6 458 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 CCDC94Q9BW85 323 aaPredicted RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 SMC4Q9NTJ3 1288 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 UBP1Q9NZI7 540 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ADAMTS1Q9UHI8 967 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 MBD1Q9UIS9 605 aaPredicted RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ZKSCAN5Q9Y2L8 839 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 FAM135AQ9P2D6 1515 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 ZCCHC11Q5TAX3 1644 aaKnown RBP3.48□□□□□ -1.85
SLIRP-208ENST00000556956 PREX2Q70Z35 1606 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 TRPM1Q7Z4N2 1603 aa3.48□□□□□ -1.85
SLIRP-208ENST00000556956 PLA2R1Q13018 1463 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 IL16Q14005 1332 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 PLXNC1O60486 1568 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ARHGEF5Q12774 1597 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 RTEL1-TNFRSF6BF6WH68 1400 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ARHGAP31Q2M1Z3 1444 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 KRTAP29-1A8MX34 341 aaPredicted RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 RBAK-RBAKDNI3L0D1 243 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 SCAMP3O14828 347 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 LRRN2O75325 713 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 CDC45O75419 566 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 MBD3O95983 291 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 PTMAP06454 111 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 VAMP1P23763 118 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 DMTNQ08495 405 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 SLC14A2Q15849 920 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 NBPF9Q3BBW0 867 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ALDH1L2Q3SY69 923 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 NBPF12Q5TAG4 269 aaPredicted RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 TAF3Q5VWG9 929 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 CASC1Q6TDU7 716 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 LRSAM1Q6UWE0 723 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 LINC01356Q8N9X3 169 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 SYAP1Q96A49 352 aaPredicted RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ZNF428Q96B54 188 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 INTS4Q96HW7 963 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 PDLIM2Q96JY6 352 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 PUS7Q96PZ0 661 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 FERD3LQ96RJ6 166 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 C1QTNF3Q9BXJ4 246 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ZBTB40Q9NUA8 1239 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 ZMYM5Q9UJ78 669 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 NOB1Q9ULX3 412 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 RRP7AQ9Y3A4 280 aaKnown RBP3.47□□□□□ -1.85
SLIRP-208ENST00000556956 PCDHA11Q9Y5I1 949 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 CDC42BPBQ9Y5S2 1711 aa3.47□□□□□ -1.85
SLIRP-208ENST00000556956 SYNMO15061 1565 aa3.46□□□□□ -1.85
SLIRP-208ENST00000556956 MEIS3P2A8K0S8 358 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 UBOX5O94941 541 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 LETM1O95202 739 aaPredicted RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 KIF20AO95235 890 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TPM3P06753 285 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 ZGLP1P0C6A0 271 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TRIM27P14373 513 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 NME1P15531 152 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 RPL10P27635 214 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 CRKP46108 304 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 MCM2P49736 904 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 CLCQ05315 142 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 EXOSC9Q06265 439 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 KIAA2012Q0VF49 1180 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 BBS9Q3SYG4 887 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 DNTTIP2Q5QJE6 756 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 ANKRD45Q5TZF3 282 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 OVOS1Q6IE37 1185 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 CAVIN1Q6NZI2 390 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TMEFF1Q8IYR6 380 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 ZNF654Q8IZM8 581 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TMEM57Q8N5G2 664 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 LINC00116Q8NCU8 138 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 MYRIPQ8NFW9 859 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 SMARCC1Q92922 1105 aaPredicted RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 C8orf49Q96NF6 230 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TM9SF2Q99805 663 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 LNPKQ9C0E8 428 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 MKRN2Q9H000 416 aaKnown RBP3.46□□□□□ -1.86
SLIRP-208ENST00000556956 TSPY26PQ9H489 355 aa3.46□□□□□ -1.86
SLIRP-208ENST00000556956 LMBRD1Q9NUN5 540 aa3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms