RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 KRT9P35527 623 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 SARSP49591 514 aaKnown RBP15.12■□□□□ 0.01
SHMT2-226ENST00000556825 CCDC122Q5T0U0 273 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 FKBP15Q5T1M5 1219 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 ERMARDQ5T6L9 678 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 HDGFL2Q7Z4V5 671 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-226ENST00000556825 IRGQQ8WZA9 623 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 SNX27Q96L92 541 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 JADE2Q9NQC1 790 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 CABP1Q9NZU7 370 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 PCDHA5Q9Y5H7 936 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 ITGA2BP08514 1039 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 HOXD11P31277 338 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-226ENST00000556825 USP11P51784 963 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 COPS2P61201 443 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 GPSM2P81274 684 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 PLS1Q14651 629 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 KRT72Q14CN4 511 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 CFAP157Q5JU67 520 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 TXNDC2Q86VQ3 553 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 FOXP4Q8IVH2 680 aaPredicted RBP15.12■□□□□ 0.01
SHMT2-226ENST00000556825 ASAP3Q8TDY4 903 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 IQCDQ96DY2 449 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 CATSPER2Q96P56 530 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 XPO6Q96QU8 1125 aaKnown RBP15.12■□□□□ 0.01
SHMT2-226ENST00000556825 TAOK3Q9H2K8 898 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 TSKSQ9UJT2 592 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 NFU1Q9UMS0 254 aa15.12■□□□□ 0.01
SHMT2-226ENST00000556825 BCL9O00512 1426 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ANKARQ7Z5J8 1434 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ATP7BP35670 1465 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 PTPDC1A2A3K4 754 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 MAGEA13PA6NCF6 341 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 RAD21O60216 631 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 MMEP08473 750 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 VDRP11473 427 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 IDEP14735 1019 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 MRPS25P82663 173 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ZNF394Q53GI3 561 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ODF2Q5BJF6 829 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 SLC4A10Q6U841 1118 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 METTL16Q86W50 562 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 DZIP1Q86YF9 867 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 CCNJLQ8IV13 435 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 SCUBE1Q8IWY4 988 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 RBBP8NLQ8NC74 664 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 STK32AQ8WU08 396 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ZNF317Q96PQ6 595 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 FAM129AQ9BZQ8 928 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 CNOT10Q9H9A5 744 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 HMG20BQ9P0W2 317 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ADD3Q9UEY8 706 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 LRCH1Q9Y2L9 728 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 USP42Q9H9J4 1324 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ABCC12Q96J65 1359 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 RGL2O15211 777 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 BIRC5O15392 142 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 NDUFB5O43674 189 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 GLRX3O76003 335 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 TPBGLP0DKB5 382 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 HSPA9P38646 679 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 CARSP49589 748 aaKnown RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 BNIP1Q12981 228 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 C8orf74Q6P047 294 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 PACS1Q6VY07 963 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ASRGL1Q7L266 308 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 TRIML1Q8N9V2 468 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 CLIP3Q96DZ5 547 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 DHTKD1Q96HY7 919 aaPredicted RBP15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ABCF3Q9NUQ8 709 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 ETNK2Q9NVF9 386 aa15.11■□□□□ 0.01
SHMT2-226ENST00000556825 MROH7-TTC4A0A0A0MT08 1334 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 WDR46O15213 610 aaKnown RBP15.1■□□□□ 0.01
SHMT2-226ENST00000556825 PRPF3O43395 683 aaKnown RBP15.1■□□□□ 0.01
SHMT2-226ENST00000556825 AKR1B10O60218 316 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 CTDNEP1O95476 244 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 PDGFRBP09619 1106 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 SPATA31D3P0C874 917 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 PRLRP16471 622 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 MTTPP55157 894 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 SPATA31D4Q6ZUB0 917 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 PPP1R12CQ9BZL4 782 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 KRT23Q9C075 422 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 SNRKQ9NRH2 765 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 SAMD15Q9P1V8 674 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 HESX1Q9UBX0 185 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 ZNF180Q9UJW8 692 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 SNX12Q9UMY4 172 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 N6AMT1Q9Y5N5 214 aa15.1■□□□□ 0.01
SHMT2-226ENST00000556825 FAM237AA0A1B0GTK4 181 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 KRT86O43790 486 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 ALDH2P05091 517 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 KCNA3P22001 575 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 LTKP29376 864 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 CCNFP41002 786 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 HPCAP84074 193 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 ITGA7Q13683 1181 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 DDB1Q16531 1140 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 KLC3Q6P597 504 aa15.09■□□□□ 0.01
SHMT2-226ENST00000556825 TRIM50Q86XT4 487 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms