RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 PRPHP41219 470 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 UBXN2AP68543 259 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 MTMR1Q13613 665 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 ZNF174Q15697 407 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 Q3C1V9 767 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 CEP55Q53EZ4 464 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 PRR16Q569H4 304 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 ARL6IP4Q66PJ3 421 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 DTHD1Q6ZMT9 781 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 ZNF467Q7Z7K2 595 aaPredicted RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 TRMT44Q8IYL2 757 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 MSL3Q8N5Y2 521 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 KRI1Q8N9T8 703 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 RASSF8Q8NHQ8 419 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 CCDC34Q96HJ3 373 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 ZIC5Q96T25 663 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 RNF186Q9NXI6 227 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 TFIP11Q9UBB9 837 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 DIS3Q9Y2L1 958 aaKnown RBP12.68□□□□□ -0.38
SHMT2-220ENST00000555634 PCDHB6Q9Y5E3 794 aa12.68□□□□□ -0.38
SHMT2-220ENST00000555634 PEX10O60683 326 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 TBC1D8O95759 1140 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 PGK2P07205 417 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 NR3C2P08235 984 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 CIITAP33076 1130 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 ATP2C1P98194 919 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-220ENST00000555634 MAP2K5Q13163 448 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 PTGDRQ13258 359 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 SLC39A14Q15043 492 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 Q4G0T1 1027 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 EARS2Q5JPH6 523 aaKnown RBP12.67□□□□□ -0.38
SHMT2-220ENST00000555634 KCNV1Q6PIU1 500 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 CCDC73Q6ZRK6 1079 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 PLA2G4DQ86XP0 818 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 FAM133AQ8N9E0 248 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 LEO1Q8WVC0 666 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-220ENST00000555634 GPRASP2Q96D09 838 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 TAAR1Q96RJ0 339 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 COL20A1Q9P218 1284 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 CLIC4Q9Y696 253 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 STK24Q9Y6E0 443 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 MORC2Q9Y6X9 1032 aaPredicted RBP12.67□□□□□ -0.38
SHMT2-220ENST00000555634 DOCK3Q8IZD9 2030 aa12.67□□□□□ -0.38
SHMT2-220ENST00000555634 MYH9P35579 1960 aaKnown RBP12.67□□□□□ -0.38
SHMT2-220ENST00000555634 WDR81Q562E7 1941 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 DNAJC25-GNG10A0A024R161 153 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 CYP3A7-CYP3A51PA0A087WV96 503 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 MAFGO15525 162 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 CUTAO60888 179 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 FKTNO75072 461 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 EIF3JO75822 258 aaKnown RBP12.66□□□□□ -0.38
SHMT2-220ENST00000555634 TDP2O95551 362 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 MBD3O95983 291 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 CYP3A7P24462 503 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 PSMC4P43686 418 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 TOB1P50616 345 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-220ENST00000555634 NBR1Q14596 966 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 NOM1Q5C9Z4 860 aaKnown RBP12.66□□□□□ -0.38
SHMT2-220ENST00000555634 POTEEQ6S8J3 1075 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 POTEDQ86YR6 584 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 TMEM87AQ8NBN3 555 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 LINC00301Q8NCQ3 95 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 GIMAP8Q8ND71 665 aaPredicted RBP12.66□□□□□ -0.38
SHMT2-220ENST00000555634 ERMNQ8TAM6 284 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 TBC1D5Q92609 795 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 FAM20AQ96MK3 541 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 SDF4Q9BRK5 362 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 PYM1Q9BRP8 204 aaKnown RBP12.66□□□□□ -0.38
SHMT2-220ENST00000555634 ZNF577Q9BSK1 485 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 WDR11Q9BZH6 1224 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 FAM13BQ9NYF5 915 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 PCDH10Q9P2E7 1040 aa12.66□□□□□ -0.38
SHMT2-220ENST00000555634 SYNGAP1Q96PV0 1343 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 GAS7O60861 476 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 LONP1P36776 959 aaKnown RBP12.65□□□□□ -0.38
SHMT2-220ENST00000555634 PRMT2P55345 433 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 UBE2HP62256 183 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 CNTN2Q02246 1040 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 LRCH2Q5VUJ6 765 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 HAUS3Q68CZ6 603 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 CDK5RAP3Q96JB5 506 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 AK8Q96MA6 479 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 MXRA8Q9BRK3 442 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 FTOQ9C0B1 505 aaKnown RBP eCLIP12.65□□□□□ -0.38
SHMT2-220ENST00000555634 GDPD2Q9HCC8 539 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 VTA1Q9NP79 307 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 RCOR1Q9UKL0 485 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 MRVI1Q9Y6F6 885 aa12.65□□□□□ -0.38
SHMT2-220ENST00000555634 VWA3AA6NCI4 1184 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 GPR25O00155 361 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 ADAMTS3O15072 1205 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 SLC37A4O43826 429 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 PRPF40AO75400 957 aaKnown RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 ECM2O94769 699 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 MARCKSP29966 332 aaPredicted RBP12.64□□□□□ -0.39
SHMT2-220ENST00000555634 MCM4P33991 863 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 TXKP42681 527 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 ARMCX2Q7L311 632 aa12.64□□□□□ -0.39
SHMT2-220ENST00000555634 VSIG10LQ86VR7 867 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms