RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 PSMA5P28066 241 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 RCAN1P53805 252 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 PSMC6P62333 389 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 FAAP100Q0VG06 881 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 VSIG10LQ86VR7 867 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 TOX2Q96NM4 488 aa23.65■■□□□ 1.38
VTI1B-205ENST00000555543 A0A1W2PPC1 479 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 CABYRO75952 493 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 CPT1AP50416 773 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 PURAQ00577 322 aaKnown RBP23.64■■□□□ 1.37
VTI1B-205ENST00000555543 ARHGAP1Q07960 439 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 HEATR3Q7Z4Q2 680 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 FBXL16Q8N461 479 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 SLC43A3Q8NBI5 491 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 UBE2OQ9C0C9 1292 aaKnown RBP23.64■■□□□ 1.37
VTI1B-205ENST00000555543 NID2Q14112 1375 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 SZT2Q5T011 3432 aa23.64■■□□□ 1.37
VTI1B-205ENST00000555543 A6NJR5 290 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 DCDC2CA8MYV0 355 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 PIK3CDO00329 1044 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 CCND2P30279 289 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 ADD1P35611 737 aaKnown RBP23.63■■□□□ 1.37
VTI1B-205ENST00000555543 METAP2P50579 478 aaKnown RBP eCLIP23.63■■□□□ 1.37
VTI1B-205ENST00000555543 WWC2Q6AWC2 1192 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 FAM126BQ8IXS8 530 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 SMARCC2Q8TAQ2 1214 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 LBHD1Q9BQE6 289 aaPredicted RBP23.63■■□□□ 1.37
VTI1B-205ENST00000555543 ZSWIM6Q9HCJ5 1215 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 DDX41Q9UJV9 622 aaKnown RBP23.63■■□□□ 1.37
VTI1B-205ENST00000555543 MRVI1Q9Y6F6 885 aa23.63■■□□□ 1.37
VTI1B-205ENST00000555543 MROH7Q68CQ1 1323 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 KIAA0355O15063 1070 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 GH1P01241 217 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 MYL3P08590 195 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 ITGA7Q13683 1181 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 TYW1BQ6NUM6 668 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 RUFY3Q7L099 469 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 BADQ92934 168 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 CUL5Q93034 780 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 TMEM39AQ9NV64 488 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 POLR3EQ9NVU0 708 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 TBX21Q9UL17 535 aa23.62■■□□□ 1.37
VTI1B-205ENST00000555543 MRPS9P82933 396 aaKnown RBP23.61■■□□□ 1.37
VTI1B-205ENST00000555543 TOB2Q14106 344 aaPredicted RBP23.61■■□□□ 1.37
VTI1B-205ENST00000555543 UBE2SQ16763 222 aa23.61■■□□□ 1.37
VTI1B-205ENST00000555543 AFG1LQ8WV93 481 aa23.61■■□□□ 1.37
VTI1B-205ENST00000555543 UPF3BQ9BZI7 483 aaKnown RBP23.61■■□□□ 1.37
VTI1B-205ENST00000555543 PSTPIP2Q9H939 334 aa23.61■■□□□ 1.37
VTI1B-205ENST00000555543 V9GY48 417 aaPredicted RBP23.61■■□□□ 1.37
VTI1B-205ENST00000555543 SCN10AQ9Y5Y9 1956 aa23.6■■□□□ 1.37
VTI1B-205ENST00000555543 CD4P01730 458 aa23.6■■□□□ 1.37
VTI1B-205ENST00000555543 TDHQ8IZJ6 230 aa23.6■■□□□ 1.37
VTI1B-205ENST00000555543 TM6SF1Q9BZW5 370 aa23.6■■□□□ 1.37
VTI1B-205ENST00000555543 LAMA2P24043 3122 aaKnown RBP23.6■■□□□ 1.37
VTI1B-205ENST00000555543 SOX1O00570 391 aaPredicted RBP23.59■■□□□ 1.37
VTI1B-205ENST00000555543 MMP3P08254 477 aa23.59■■□□□ 1.37
VTI1B-205ENST00000555543 BRDTQ58F21 947 aaPredicted RBP23.59■■□□□ 1.37
VTI1B-205ENST00000555543 PPP1R13LQ8WUF5 828 aa23.59■■□□□ 1.37
VTI1B-205ENST00000555543 MTG1Q9BT17 334 aaPredicted RBP23.59■■□□□ 1.37
VTI1B-205ENST00000555543 CYP46A1Q9Y6A2 500 aa23.59■■□□□ 1.37
VTI1B-205ENST00000555543 STXBP3O00186 592 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 SORBS3O60504 671 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 RAG1P15918 1043 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 UBA1P22314 1058 aaKnown RBP23.58■■□□□ 1.37
VTI1B-205ENST00000555543 NAPAP54920 295 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 EVCP57679 992 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 SP2Q02086 613 aa23.58■■□□□ 1.37
VTI1B-205ENST00000555543 EMID1Q96A84 441 aaPredicted RBP23.58■■□□□ 1.37
VTI1B-205ENST00000555543 INPP4AQ96PE3 977 aaPredicted RBP23.58■■□□□ 1.37
VTI1B-205ENST00000555543 B4GALT4O60513 344 aa23.57■■□□□ 1.36
VTI1B-205ENST00000555543 PDIA3P30101 505 aaKnown RBP23.57■■□□□ 1.36
VTI1B-205ENST00000555543 SEMA3FQ13275 785 aa23.57■■□□□ 1.36
VTI1B-205ENST00000555543 TRPV6Q9H1D0 765 aa23.57■■□□□ 1.36
VTI1B-205ENST00000555543 NCOA5Q9HCD5 579 aaKnown RBP23.57■■□□□ 1.36
VTI1B-205ENST00000555543 RTEL1Q9NZ71 1219 aa23.57■■□□□ 1.36
VTI1B-205ENST00000555543 CCDC196A0A1B0GTZ2 297 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 TLR3O15455 904 aaKnown RBP23.56■■□□□ 1.36
VTI1B-205ENST00000555543 GGPS1O95749 300 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 NBPF20Q3BBV1 942 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 PCNX4Q63HM2 1172 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 PPP1R18Q6NYC8 613 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 DHX37Q8IY37 1157 aaKnown RBP23.56■■□□□ 1.36
VTI1B-205ENST00000555543 LARP6Q9BRS8 491 aaKnown RBP23.56■■□□□ 1.36
VTI1B-205ENST00000555543 ALDH8A1Q9H2A2 487 aaPredicted RBP23.56■■□□□ 1.36
VTI1B-205ENST00000555543 BCAS3Q9H6U6 928 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 BARHL2Q9NY43 387 aa23.56■■□□□ 1.36
VTI1B-205ENST00000555543 hCG_1984214I3L0E3 225 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 KPNA6O60684 536 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 PPFIA3O75145 1194 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 STAM2O75886 525 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 EPHB4P54760 987 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 CCT2P78371 535 aaKnown RBP23.55■■□□□ 1.36
VTI1B-205ENST00000555543 LAMC2Q13753 1193 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 NTRK3Q16288 839 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 PFKFB3Q16875 520 aaPredicted RBP23.55■■□□□ 1.36
VTI1B-205ENST00000555543 CELF3Q5SZQ8 465 aaKnown RBP23.55■■□□□ 1.36
VTI1B-205ENST00000555543 MYSM1Q5VVJ2 828 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 KCNV1Q6PIU1 500 aa23.55■■□□□ 1.36
VTI1B-205ENST00000555543 ZNF713Q8N859 430 aaPredicted RBP23.55■■□□□ 1.36
VTI1B-205ENST00000555543 PPTC7Q8NI37 304 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms