RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 STRBPQ96SI9 672 aaKnown RBP12.79□□□□□ -0.36
SHMT2-216ENST00000554975 SLF1Q9BQI6 1058 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 RAVER2Q9HCJ3 691 aaKnown RBP12.79□□□□□ -0.36
SHMT2-216ENST00000554975 CCDC39Q9UFE4 941 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 CFAP45Q9UL16 551 aa12.79□□□□□ -0.36
SHMT2-216ENST00000554975 GNEQ9Y223 722 aaKnown RBP12.79□□□□□ -0.36
SHMT2-216ENST00000554975 MINDY4BA8MYZ0 360 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 E7EWF7 191 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 M0R2C6 588 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 CYP2C9P11712 490 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 TDO2P48775 406 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 TNFAIP2Q03169 654 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 TRDNQ13061 729 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 TLK2Q86UE8 772 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 RPUSD2Q8IZ73 545 aaKnown RBP12.78□□□□□ -0.36
SHMT2-216ENST00000554975 STK11IPQ8N1F8 1099 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 NCOA7Q8NI08 942 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 BRF1Q92994 677 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 SEC62Q99442 399 aaKnown RBP12.78□□□□□ -0.36
SHMT2-216ENST00000554975 RBSNQ9H1K0 784 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 GOPCQ9HD26 462 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 RTN4Q9NQC3 1192 aaKnown RBP12.78□□□□□ -0.36
SHMT2-216ENST00000554975 TRIOO75962 3097 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 MYO7AQ13402 2215 aa12.78□□□□□ -0.36
SHMT2-216ENST00000554975 PRR33A8MZF0 331 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 GNAT2P19087 354 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 EVCP57679 992 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 NHLH1Q02575 133 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 DNM1Q05193 864 aaKnown RBP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 FSCN1Q16658 493 aaKnown RBP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 C12orf60Q5U649 245 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 CTR9Q6PD62 1173 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 C16orf86Q6ZW13 317 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 ANKRD35Q8N283 1001 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 PPP1R13LQ8WUF5 828 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 SPATA32Q96LK8 384 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 CCDC17Q96LX7 622 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 ZNF396Q96N95 335 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 PDGFCQ9NRA1 345 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 TRMT13Q9NUP7 481 aaKnown RBP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 ARPP21Q9UBL0 812 aaPredicted RBP12.77□□□□□ -0.37
SHMT2-216ENST00000554975 ATG2AQ2TAZ0 1938 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 C5orf42Q9H799 3197 aa12.77□□□□□ -0.37
SHMT2-216ENST00000554975 LCHNA4D1U4 455 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 GSG1L2A8MUP6 293 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 ATP2A1O14983 1001 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 CABYRO75952 493 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 CAVIN2O95810 425 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 NDUFB10O96000 172 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 CCDC192P0DO97 292 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 SMPD1P17405 629 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 EXOSC10Q01780 885 aaKnown RBP12.76□□□□□ -0.37
SHMT2-216ENST00000554975 CPLX2Q6PUV4 134 aaKnown RBP12.76□□□□□ -0.37
SHMT2-216ENST00000554975 GDPD5Q8WTR4 605 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 ANKS1AQ92625 1134 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 NACAP1Q9BZK3 213 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 NUP62CLQ9H1M0 184 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 KANSL2Q9H9L4 492 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 GDPD2Q9HCC8 539 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 USP34Q70CQ2 3546 aa12.76□□□□□ -0.37
SHMT2-216ENST00000554975 PTPDC1A2A3K4 754 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 SOWAHBA6NEL2 793 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 DYNC1LI2O43237 492 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-216ENST00000554975 GADD45BO75293 160 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-216ENST00000554975 CDKL5O76039 1030 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 RESTQ13127 1097 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 STOX1Q6ZVD7 989 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 TMCO2Q7Z6W1 182 aaPredicted RBP12.75□□□□□ -0.37
SHMT2-216ENST00000554975 HERC6Q8IVU3 1022 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 FAM178BQ8IXR5 827 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 FAM133AQ8N9E0 248 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 NSUN7Q8NE18 718 aaKnown RBP12.75□□□□□ -0.37
SHMT2-216ENST00000554975 KIFC2Q96AC6 838 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 FBXL18Q96ME1 805 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 TCEANC2Q96MN5 208 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 UIMC1Q96RL1 719 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 SLC9A7Q96T83 725 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 LARP6Q9BRS8 491 aaKnown RBP12.75□□□□□ -0.37
SHMT2-216ENST00000554975 SLC38A10Q9HBR0 1119 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 HOMER2Q9NSB8 354 aa12.75□□□□□ -0.37
SHMT2-216ENST00000554975 F5H6K3 240 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 ZNF213O14771 459 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 IL9P15248 144 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 KLRC3Q07444 240 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 SCRN1Q12765 414 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 STK3Q13188 491 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 ALX1Q15699 326 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 FOXD4L6Q3SYB3 417 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 GIMAP6Q6P9H5 292 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 FOXD4L3Q6VB84 417 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 FBXO16Q8IX29 292 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 IFNL3Q8IZI9 196 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 GJD3Q8N144 294 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 PRPF38AQ8NAV1 312 aaKnown RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 TMEM87BQ96K49 555 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 MTA3Q9BTC8 594 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 NAPBQ9H115 298 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 UBE2ZQ9H832 354 aaPredicted RBP12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms