RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 PMLP29590 882 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 SEPHS1P49903 392 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 CORO7P57737 925 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 FOXO4P98177 505 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 DLX2Q07687 328 aaPredicted RBP2.29□□□□□ -2.04
PRPF39-208ENST00000554785 SCRN1Q12765 414 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 SKOR2Q2VWA4 1001 aaPredicted RBP2.29□□□□□ -2.04
PRPF39-208ENST00000554785 VWA3BQ502W6 1294 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 LARP1BQ659C4 914 aaKnown RBP2.29□□□□□ -2.04
PRPF39-208ENST00000554785 MRM1Q6IN84 353 aaKnown RBP2.29□□□□□ -2.04
PRPF39-208ENST00000554785 C6orf15Q6UXA7 325 aaPredicted RBP2.29□□□□□ -2.04
PRPF39-208ENST00000554785 CCDC103Q8IW40 242 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 LZTR1Q8N653 840 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 PLEKHO2Q8TD55 490 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 FNIP1Q8TF40 1166 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NOX5Q96PH1 765 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 GBP3Q9H0R5 595 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 OSBPL2Q9H1P3 480 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ZSWIM4Q9H7M6 989 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 HMGXB3Q12766 1538 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NCAPD3P42695 1498 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ARAP1Q96P48 1450 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 DDAH1O94760 285 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 FUCA1P04066 466 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NTRK1P04629 796 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 KRTAP10-2P60368 255 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 HTRA3P83110 453 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NFKB2Q00653 900 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 TMEM62Q0P6H9 643 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 GRB10Q13322 594 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 SERINC3Q13530 473 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 NFE2L2Q16236 605 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 DDR2Q16832 855 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 PRSS53Q2L4Q9 553 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 GTF2IRD2BQ6EKJ0 949 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 GTF2IRD2Q86UP8 949 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 CELF2-AS1Q8N7Q2 184 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 BVESQ8NE79 360 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 FRS2Q8WU20 508 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 MKL1Q969V6 931 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 MRGPRX3Q96LB0 322 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ST7Q9NRC1 585 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 FBXL7Q9UJT9 491 aa2.29□□□□□ -2.04
PRPF39-208ENST00000554785 ZNF608Q9ULD9 1512 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-208ENST00000554785 CEP164Q9UPV0 1460 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 PDS5BQ9NTI5 1447 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 PRICKLE3O43900 615 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-208ENST00000554785 GJB6O95452 261 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 ITGAVP06756 1048 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 PAMP19021 973 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 FPR2P25090 351 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 GRIA2P42262 883 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 BMS1Q14692 1282 aaKnown RBP2.28□□□□□ -2.04
PRPF39-208ENST00000554785 NCAPHQ15003 741 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 ZFYVE27Q5T4F4 411 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 DENND5AQ6IQ26 1287 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 TEX2Q8IWB9 1127 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 TRIM59Q8IWR1 403 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 FAM178BQ8IXR5 827 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 NLGN1Q8N2Q7 840 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 FAM26EQ8N5C1 309 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 BTN2A2Q8WVV5 523 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 GPR20Q99678 358 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 CCDC113Q9H0I3 377 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 NKX2-4Q9H2Z4 354 aa2.28□□□□□ -2.04
PRPF39-208ENST00000554785 DBR1Q9UK59 544 aaKnown RBP2.28□□□□□ -2.04
PRPF39-208ENST00000554785 CDK11AQ9UQ88 783 aaPredicted RBP2.28□□□□□ -2.04
PRPF39-208ENST00000554785 LOC105371045A0A1W2PR82 267 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 NCAM1P13591 858 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 PFKLP17858 780 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SLURP1P55000 103 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 WWC2Q6AWC2 1192 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 LRP10Q7Z4F1 713 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 NOP9Q86U38 636 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SAPCD2Q86UD0 394 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 GGNQ86UU5 652 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 STK32CQ86UX6 486 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 KREMEN2Q8NCW0 462 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SMARCC2Q8TAQ2 1214 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 NPLOC4Q8TAT6 608 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 ALG3Q92685 438 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 PPP1R14AQ96A00 147 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 MRFAP1L1Q96HT8 127 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 DEPDC7Q96QD5 511 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SRPK1Q96SB4 655 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 APBA2Q99767 749 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SPATA25Q9BR10 227 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 PIF1Q9H611 641 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 CYP26B1Q9NR63 512 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 BTG4Q9NY30 223 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 MARCH2Q9P0N8 246 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SRRDQ9UH36 339 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 MSRB2Q9Y3D2 182 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 DUSP10Q9Y6W6 482 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 EIF4G3O43432 1585 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 FAM221BA6H8Z2 402 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 CCDC85CA6NKD9 419 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 PDPK1O15530 556 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SGSM2O43147 1006 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 CAPNS1P04632 268 aa2.27□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms