RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 TUBB8Q3ZCM7 444 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 SLC27A3Q5K4L6 730 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 CYP26C1Q6V0L0 522 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 DPP8Q6V1X1 898 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-207ENST00000553837 CABP7Q86V35 215 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 ACRBPQ8NEB7 543 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 BCAS4Q8TDM0 211 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 C6orf50Q9HD87 102 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 GTF3C5Q9Y5Q8 519 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-207ENST00000553837 MYH8P13535 1937 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 PLIN4Q96Q06 1357 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 RHOBTB3O94955 611 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 SCNN1DP51172 638 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 KCNB1Q14721 858 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 DOK7Q18PE1 504 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 FBXW10Q5XX13 1052 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 KCNV1Q6PIU1 500 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 POTEAQ6S8J7 498 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 NEK8Q86SG6 692 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 GIMAP8Q8ND71 665 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-207ENST00000553837 EEF2KMTQ96G04 330 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 ATP6V0A2Q9Y487 856 aa13.59□□□□□ -0.23
SHMT2-207ENST00000553837 IRF6O14896 467 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 NKRFO15226 690 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 PPP1R11O60927 126 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SMARCA1P28370 1054 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SF3B2Q13435 895 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 B4GALNT4Q76KP1 1039 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 TRAPPC11Q7Z392 1133 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SLF2Q8IX21 1173 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 PRPF38AQ8NAV1 312 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 HPS3Q969F9 1004 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 DUSP9Q99956 384 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 GPCPD1Q9NPB8 672 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SEC63Q9UGP8 760 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 ATXN2Q99700 1313 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 GOLGA6BA6NDN3 693 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 EIF3HO15372 352 aaKnown RBP eCLIP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 C21orf2O43822 256 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SLC37A4O43826 429 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SNHG28P0DPA3 235 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 GNA11P29992 359 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 CKAP4Q07065 602 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 ZKSCAN8Q15776 578 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 TTBK2Q6IQ55 1244 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 TTI2Q6NXR4 508 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 CCNI2Q6ZMN8 369 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 SPATS2Q86XZ4 545 aaKnown RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 RIN2Q8WYP3 895 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-207ENST00000553837 CABS1Q96KC9 395 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 TRIM9Q9C026 710 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 COA1Q9GZY4 146 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 KCNQ5Q9NR82 932 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 ABHD10Q9NUJ1 306 aa13.58□□□□□ -0.24
SHMT2-207ENST00000553837 BRWD3Q6RI45 1802 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 H7C1D1 291 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 AGPSO00116 658 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 PSMD14O00487 310 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 CLSTN1O94985 981 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 FCER1AP12319 257 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 SHMT1P34896 483 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 UBXN1Q04323 297 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 SPAG1Q07617 926 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 STK4Q13043 487 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 SHROOM1Q2M3G4 852 aaPredicted RBP13.57□□□□□ -0.24
SHMT2-207ENST00000553837 SOGA3Q5TF21 947 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 ZFPM1Q8IX07 1006 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 REXO1Q8N1G1 1221 aaKnown RBP13.57□□□□□ -0.24
SHMT2-207ENST00000553837 ZNF507Q8TCN5 953 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 MTMR9Q96QG7 549 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 QTRT2Q9H974 415 aaKnown RBP13.57□□□□□ -0.24
SHMT2-207ENST00000553837 USP40Q9NVE5 1235 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 PCDHAC2Q9Y5I4 1007 aa13.57□□□□□ -0.24
SHMT2-207ENST00000553837 ESYT2A0FGR8 921 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 KLHL33A6NCF5 533 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 GOLGA8KD6RF30 607 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 TDP2O95551 362 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 SRGNP10124 158 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 NFIAQ12857 509 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 FAM43BQ6ZT52 329 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-207ENST00000553837 AK8Q96MA6 479 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 CHP1Q99653 195 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 SELENOOQ9BVL4 669 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 SH3BP1Q9Y3L3 701 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 SAR1BQ9Y6B6 198 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 QSER1Q2KHR3 1735 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 KIAA0754O94854 1291 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 ERCC3P19447 782 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 TXKP42681 527 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 GNGT1P63211 74 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 GRB10Q13322 594 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 TRIM14Q14142 442 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 CDC42EP5Q6NZY7 148 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 PNMA5Q96PV4 448 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 MMS19Q96T76 1030 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 C7orf25Q9BPX7 421 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 NUDT12Q9BQG2 462 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 JMJD4Q9H9V9 463 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 BLOC1S4Q9NUP1 217 aa13.56□□□□□ -0.24
SHMT2-207ENST00000553837 GOLGB1Q14789 3259 aaKnown RBP13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms