RNA–Protein interactions for RNA: ENST00000553527.1

TDP1-205, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 910 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-205ENST00000553527 V9GY48 417 aaPredicted RBP27.19■■□□□ 1.94
TDP1-205ENST00000553527 BMP8BP34820 402 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 ADD1P35611 737 aaKnown RBP27.18■■□□□ 1.94
TDP1-205ENST00000553527 METAP2P50579 478 aaKnown RBP eCLIP27.18■■□□□ 1.94
TDP1-205ENST00000553527 FAAP100Q0VG06 881 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 ITGA7Q13683 1181 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 CCDC62Q6P9F0 684 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 VSIG10LQ86VR7 867 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 PSTPIP2Q9H939 334 aa27.18■■□□□ 1.94
TDP1-205ENST00000553527 UPF2Q9HAU5 1272 aaKnown RBP27.18■■□□□ 1.94
TDP1-205ENST00000553527 CNTNAP5Q8WYK1 1306 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 SORBS3O60504 671 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 CABYRO75952 493 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 CCND2P30279 289 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 CDK7P50613 346 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 BRDTQ58F21 947 aaPredicted RBP27.17■■□□□ 1.94
TDP1-205ENST00000553527 RUFY3Q7L099 469 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 ANKRD33Q7Z3H0 272 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 BADQ92934 168 aa27.17■■□□□ 1.94
TDP1-205ENST00000553527 FAM217BQ9NTX9 383 aaPredicted RBP27.17■■□□□ 1.94
TDP1-205ENST00000553527 LTBP2Q14767 1821 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 MEIS2O14770 477 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 CHMP4BP1P59074 171 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 TOX2Q96NM4 488 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 BACH2Q9BYV9 841 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 POLR3EQ9NVU0 708 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 RTEL1Q9NZ71 1219 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 DDX41Q9UJV9 622 aaKnown RBP27.16■■□□□ 1.94
TDP1-205ENST00000553527 MROH7Q68CQ1 1323 aa27.16■■□□□ 1.94
TDP1-205ENST00000553527 GH1P01241 217 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 RAG1P15918 1043 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 AFG1LQ8WV93 481 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 UPF3BQ9BZI7 483 aaKnown RBP27.15■■□□□ 1.94
TDP1-205ENST00000553527 ZSWIM6Q9HCJ5 1215 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 CYP46A1Q9Y6A2 500 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 GRIN2DO15399 1336 aa27.15■■□□□ 1.94
TDP1-205ENST00000553527 RGS20O76081 388 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 ITGB8P26012 769 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 FXR1P51114 621 aaKnown RBP eCLIP27.14■■□□□ 1.94
TDP1-205ENST00000553527 ANAPC15P60006 121 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 PURAQ00577 322 aaKnown RBP27.14■■□□□ 1.94
TDP1-205ENST00000553527 FUT2Q10981 343 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 UBE2SQ16763 222 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 WWC2Q6AWC2 1192 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 PPP1R13LQ8WUF5 828 aa27.14■■□□□ 1.94
TDP1-205ENST00000553527 LARP6Q9BRS8 491 aaKnown RBP27.14■■□□□ 1.94
TDP1-205ENST00000553527 CCDC196A0A1B0GTZ2 297 aa27.13■■□□□ 1.93
TDP1-205ENST00000553527 TLR3O15455 904 aaKnown RBP27.13■■□□□ 1.93
TDP1-205ENST00000553527 NAPAP54920 295 aa27.13■■□□□ 1.93
TDP1-205ENST00000553527 ARHGAP1Q07960 439 aa27.13■■□□□ 1.93
TDP1-205ENST00000553527 MTG1Q9BT17 334 aaPredicted RBP27.13■■□□□ 1.93
TDP1-205ENST00000553527 A6NJR5 290 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 PIK3CDO00329 1044 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 KIAA0355O15063 1070 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 PPFIA3O75145 1194 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 RCAN1P53805 252 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 CCT2P78371 535 aaKnown RBP27.12■■□□□ 1.93
TDP1-205ENST00000553527 FAM126BQ8IXS8 530 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 DHX37Q8IY37 1157 aaKnown RBP27.12■■□□□ 1.93
TDP1-205ENST00000553527 TDHQ8IZJ6 230 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 DOCK5Q9H7D0 1870 aa27.12■■□□□ 1.93
TDP1-205ENST00000553527 MRPS9P82933 396 aaKnown RBP27.11■■□□□ 1.93
TDP1-205ENST00000553527 FBXL16Q8N461 479 aa27.11■■□□□ 1.93
TDP1-205ENST00000553527 AGXT2Q9BYV1 514 aa27.11■■□□□ 1.93
TDP1-205ENST00000553527 C22orf23Q9BZE7 217 aa27.11■■□□□ 1.93
TDP1-205ENST00000553527 A0A1W2PPC1 479 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 KPNA6O60684 536 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 MMP3P08254 477 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 SP2Q02086 613 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 TOB2Q14106 344 aaPredicted RBP27.1■■□□□ 1.93
TDP1-205ENST00000553527 FAM47CQ5HY64 1035 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 TYW1BQ6NUM6 668 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 KCNV1Q6PIU1 500 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 SLC43A3Q8NBI5 491 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 TRPV6Q9H1D0 765 aa27.1■■□□□ 1.93
TDP1-205ENST00000553527 SPDYE3A6NKU9 549 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 PDIA3P30101 505 aaKnown RBP27.09■■□□□ 1.93
TDP1-205ENST00000553527 LAMC2Q13753 1193 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 PPP1R12CQ9BZL4 782 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 TM6SF1Q9BZW5 370 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 NCOA5Q9HCD5 579 aaKnown RBP27.09■■□□□ 1.93
TDP1-205ENST00000553527 PCDHA6Q9UN73 950 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 PCDHA8Q9Y5H6 950 aa27.09■■□□□ 1.93
TDP1-205ENST00000553527 SMCO2A6NFE2 343 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 STXBP3O00186 592 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 B4GALT4O60513 344 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 GGPS1O95749 300 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 NBPF20Q3BBV1 942 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 GNPTABQ3T906 1256 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 PHKBQ93100 1093 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 MLXIPQ9HAP2 919 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 PDRG1Q9NUG6 133 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 TBX21Q9UL17 535 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 FRMPD4Q14CM0 1322 aa27.08■■□□□ 1.93
TDP1-205ENST00000553527 TIMP1P01033 207 aa27.07■■□□□ 1.92
TDP1-205ENST00000553527 CD4P01730 458 aa27.07■■□□□ 1.92
TDP1-205ENST00000553527 AKAP17AQ02040 695 aaKnown RBP27.07■■□□□ 1.92
TDP1-205ENST00000553527 CELF3Q5SZQ8 465 aaKnown RBP27.07■■□□□ 1.92
TDP1-205ENST00000553527 PCNX4Q63HM2 1172 aa27.07■■□□□ 1.92
TDP1-205ENST00000553527 BARHL2Q9NY43 387 aa27.07■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms