RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 STK24Q9Y6E0 443 aa29.51■■■□□ 2.31
CCDC88C-205ENST00000553403 PVALEFA0A1B0GWK0 134 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 PRR16Q569H4 304 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 NBPF12Q5TAG4 269 aaPredicted RBP29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 LENG9Q96B70 501 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 DHTKD1Q96HY7 919 aaPredicted RBP29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 EHMT1Q9H9B1 1298 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 FBXO28Q9NVF7 368 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 ZNF112Q9UJU3 913 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 PDE4DQ08499 809 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 LDHDQ86WU2 507 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 GPRC5DQ9NZD1 345 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 RNF181Q9P0P0 153 aa29.5■■■□□ 2.31
CCDC88C-205ENST00000553403 MYMKA6NI61 221 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 PSMA7O14818 248 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 NRDCO43847 1150 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 LMNB1P20700 586 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 INPP5BP32019 993 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 CCT6AP40227 531 aaKnown RBP29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 UNC13DQ70J99 1090 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 GPC2Q8N158 579 aa29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 PRPF38AQ8NAV1 312 aaKnown RBP29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 LIMA1Q9UHB6 759 aaKnown RBP29.49■■■□□ 2.31
CCDC88C-205ENST00000553403 CFBP00751 764 aa29.48■■■□□ 2.31
CCDC88C-205ENST00000553403 ICAM1P05362 532 aa29.48■■■□□ 2.31
CCDC88C-205ENST00000553403 FILIP1LQ4L180 1135 aa29.48■■■□□ 2.31
CCDC88C-205ENST00000553403 GJA10Q969M2 543 aa29.48■■■□□ 2.31
CCDC88C-205ENST00000553403 SLF1Q9BQI6 1058 aa29.48■■■□□ 2.31
CCDC88C-205ENST00000553403 DICER1Q9UPY3 1922 aaKnown RBP29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 FAM86B1E9PN63 330 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 FAM86B2P0C5J1 330 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 TBX2Q13207 712 aaPredicted RBP29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 ADD3Q9UEY8 706 aaKnown RBP29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 LRRC10BA6NIK2 292 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 ZNF76P36508 570 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 USP14P54578 494 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 ECM1Q16610 540 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 ANGEL2Q5VTE6 544 aaKnown RBP29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 SPECC1LQ69YQ0 1117 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 FCHSD1Q86WN1 690 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 WDR18Q9BV38 432 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 KCND1Q9NSA2 647 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 PPP2R3BQ9Y5P8 575 aa29.47■■■□□ 2.31
CCDC88C-205ENST00000553403 SPIRE1Q08AE8 756 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 HAUS3Q68CZ6 603 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 KCNK18Q7Z418 384 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 SCYL3Q8IZE3 742 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 ANKRD20A12PQ8NF67 263 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 ERMNQ8TAM6 284 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 NOC3LQ8WTT2 800 aaKnown RBP29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 MAPK8IP1Q9UQF2 711 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 DOCK1Q14185 1865 aa29.46■■■□□ 2.31
CCDC88C-205ENST00000553403 KCNJ6P48051 423 aa29.45■■■□□ 2.31
CCDC88C-205ENST00000553403 CCDC112Q8NEF3 446 aa29.45■■■□□ 2.31
CCDC88C-205ENST00000553403 TRPM4Q8TD43 1214 aa29.45■■■□□ 2.31
CCDC88C-205ENST00000553403 TBC1D5Q92609 795 aa29.45■■■□□ 2.31
CCDC88C-205ENST00000553403 AS3MTQ9HBK9 375 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 PNMA2Q9UL42 364 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 CCPG1Q9ULG6 757 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 ZNF536O15090 1300 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 BICDL2A1A5D9 508 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 MSH4O15457 936 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 CCNE1P24864 410 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 TERF1P54274 439 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 DNTTIP2Q5QJE6 756 aaKnown RBP29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 THAP9Q9H5L6 903 aa29.44■■■□□ 2.3
CCDC88C-205ENST00000553403 IGLV3-22A0A075B6J6 115 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 STK4Q13043 487 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 PSMD2Q13200 908 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 TCP11X2Q5H9J9 407 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 TTI2Q6NXR4 508 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 P2RX5Q93086 422 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 EMILIN3Q9NT22 766 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 RABGAP1Q9Y3P9 1069 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 SMCHD1A6NHR9 2005 aa29.43■■■□□ 2.3
CCDC88C-205ENST00000553403 KCNJ18B7U540 433 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 PBX1P40424 430 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 HSD17B4P51659 736 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 GHRHRQ02643 423 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 KCNJ12Q14500 433 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 KRT31Q15323 416 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 SAMD1Q6SPF0 538 aaPredicted RBP29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 SAMD3Q8N6K7 520 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 DDX12PQ92771 950 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 KIAA1024Q9UPX6 916 aa29.42■■■□□ 2.3
CCDC88C-205ENST00000553403 COBLO75128 1261 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 FDX1P10109 184 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 STAT3P40763 770 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 AGBL1Q96MI9 1066 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 TMX1Q9H3N1 280 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 SLC38A10Q9HBR0 1119 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 PICK1Q9NRD5 415 aa29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 BMP2KQ9NSY1 1161 aaPredicted RBP29.41■■■□□ 2.3
CCDC88C-205ENST00000553403 FCER1AP12319 257 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 PMS1P54277 932 aaKnown RBP29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 EHHADHQ08426 723 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 MTMR2Q13614 643 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 MCF2L2Q86YR7 1114 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 KCTD17Q8N5Z5 321 aa29.4■■■□□ 2.3
CCDC88C-205ENST00000553403 TRIM47Q96LD4 638 aa29.4■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms