RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 PDE1AP54750 535 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 PPIGQ13427 754 aaKnown RBP eCLIP8.99□□□□□ -0.971e-7■■■□□ 15.5
NEK3-201ENST00000550331 HDAC1Q13547 482 aaPredicted RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 PWP2Q15269 919 aaKnown RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 FSCN1Q16658 493 aaKnown RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 CCDC96Q2M329 555 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 MUM1L1Q5H9M0 696 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 ANKRD45Q5TZF3 282 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 PSRC1Q6PGN9 363 aaPredicted RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 BTNL9Q6UXG8 535 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 TLK2Q86UE8 772 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 TMEM199Q8N511 208 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 MORC4Q8TE76 937 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 VTI1AQ96AJ9 217 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 C1QTNF1Q9BXJ1 281 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 PBX4Q9BYU1 374 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 AP5M1Q9H0R1 490 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 RANBP17Q9H2T7 1088 aaKnown RBP8.99□□□□□ -0.97
NEK3-201ENST00000550331 PNMA2Q9UL42 364 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 CCPG1Q9ULG6 757 aa8.99□□□□□ -0.97
NEK3-201ENST00000550331 ZEB2O60315 1214 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 PCP11498 1178 aaKnown RBP8.98□□□□□ -0.97
NEK3-201ENST00000550331 SMPD1P17405 629 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 AAMPQ13685 434 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 ADGRE1Q14246 886 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 MCMDC2Q4G0Z9 681 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 RASIP1Q5U651 963 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 IQSEC1Q6DN90 963 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 NSMFQ6X4W1 530 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 NOL8Q76FK4 1167 aaKnown RBP8.98□□□□□ -0.97
NEK3-201ENST00000550331 RASGRP2Q7LDG7 609 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 SLC43A3Q8NBI5 491 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 NECAB3Q96P71 396 aaPredicted RBP8.98□□□□□ -0.97
NEK3-201ENST00000550331 VTA1Q9NP79 307 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 INCENPQ9NQS7 918 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 TCP11L1Q9NUJ3 509 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 ADD3Q9UEY8 706 aaKnown RBP8.98□□□□□ -0.97
NEK3-201ENST00000550331 CHD9Q3L8U1 2897 aa8.98□□□□□ -0.97
NEK3-201ENST00000550331 A0A0D9SFI3 127 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 DYNC1LI2O43237 492 aaPredicted RBP8.97□□□□□ -0.97
NEK3-201ENST00000550331 FGAP02671 866 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 HSPD1P10809 573 aaKnown RBP8.97□□□□□ -0.97
NEK3-201ENST00000550331 CSF2RAP15509 400 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 GMPRP36959 345 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 RPIAP49247 311 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 NT5C2P49902 561 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 SNAP25P60880 206 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 BEX3Q00994 111 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 TMEM240Q5SV17 173 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 SYDE2Q5VT97 1194 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 TAPT1Q6NXT6 567 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 CXCL17Q6UXB2 119 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 C16orf59Q7L2K0 433 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 FBXO16Q8IX29 292 aaPredicted RBP8.97□□□□□ -0.97
NEK3-201ENST00000550331 CHMP4CQ96CF2 233 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 FAM227BQ96M60 508 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 TTC14Q96N46 770 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 CRBNQ96SW2 442 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 TMEM47Q9BQJ4 181 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 SLC6A16Q9GZN6 736 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 TOMM22Q9NS69 142 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 MSRAQ9UJ68 235 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 MTMR7Q9Y216 660 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 HCN4Q9Y3Q4 1203 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 MCM3APO60318 1980 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 LRRC37A2A6NM11 1700 aa8.97□□□□□ -0.97
NEK3-201ENST00000550331 REV3LO60673 3130 aa8.96□□□□□ -0.97
NEK3-201ENST00000550331 PIEZO1Q92508 2521 aa8.96□□□□□ -0.97
NEK3-201ENST00000550331 MYH4Q9Y623 1939 aa8.96□□□□□ -0.97
NEK3-201ENST00000550331 XIRP2A4UGR9 3374 aa8.96□□□□□ -0.97
NEK3-201ENST00000550331 NFIBO00712 420 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 PDHBP11177 359 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 SLC16A2P36021 539 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 ALDH5A1P51649 535 aaPredicted RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 MFAP1P55081 439 aaKnown RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 ZNF543Q08ER8 600 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 ITGA7Q13683 1181 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 BAATQ14032 418 aaPredicted RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 RAB30Q15771 203 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 DUSP28Q4G0W2 176 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 RRP12Q5JTH9 1297 aaKnown RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 TTBK2Q6IQ55 1244 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 KIAA1211Q6ZU35 1233 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 ZNF365Q70YC5 407 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 EEPD1Q7L9B9 569 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 ZNF589Q86UQ0 364 aaPredicted RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 MICALL1Q8N3F8 863 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 MPHOSPH6Q99547 160 aaKnown RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 PPP1R12CQ9BZL4 782 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 MTIF3Q9H2K0 278 aaKnown RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 NKX2-4Q9H2Z4 354 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 HIPK3Q9H422 1215 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 RNF41Q9H4P4 317 aaPredicted RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 IL23AQ9NPF7 189 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 PDGFCQ9NRA1 345 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 CXXC1Q9P0U4 656 aaPredicted RBP8.96□□□□□ -0.98
NEK3-201ENST00000550331 GRIN2DO15399 1336 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 CCDC171Q6TFL3 1326 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 WDR19Q8NEZ3 1342 aa8.96□□□□□ -0.98
NEK3-201ENST00000550331 PRRC2BQ5JSZ5 2229 aaKnown RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 75.2 ms