RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 SCFD2Q8WU76 684 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 WDR11Q9BZH6 1224 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 PAK6Q9NQU5 681 aaPredicted RBP15.72■□□□□ 0.11
PTCH1-213ENST00000546820 GJB4Q9NTQ9 266 aa15.72■□□□□ 0.11
PTCH1-213ENST00000546820 DDX20Q9UHI6 824 aaKnown RBP15.72■□□□□ 0.11
PTCH1-213ENST00000546820 CCDC194A0A1B0GVG4 234 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 TFRCP02786 760 aaKnown RBP15.71■□□□□ 0.11
PTCH1-213ENST00000546820 TGFB3P10600 412 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 PDCP20941 246 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 SREBF1P36956 1147 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 FOSBP53539 338 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 GNL2Q13823 731 aaKnown RBP15.71■□□□□ 0.11
PTCH1-213ENST00000546820 TTLL4Q14679 1199 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 LARP1BQ659C4 914 aaKnown RBP15.71■□□□□ 0.11
PTCH1-213ENST00000546820 TAPT1Q6NXT6 567 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 SEPT14Q6ZU15 432 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 SHISA4Q96DD7 197 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 DEFB118Q96PH6 123 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 KATNBL1Q9H079 304 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 SPC25Q9HBM1 224 aa15.71■□□□□ 0.11
PTCH1-213ENST00000546820 RBM47A0AV96 593 aaKnown RBP15.7■□□□□ 0.1
PTCH1-213ENST00000546820 H3BQV1 296 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 NKRFO15226 690 aaKnown RBP eCLIP15.7■□□□□ 0.1
PTCH1-213ENST00000546820 MAFGO15525 162 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 SGPL1O95470 568 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 CYP3A4P08684 503 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 USP11P51784 963 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 ARHGAP4P98171 946 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 NONOQ15233 471 aaKnown RBP eCLIP15.7■□□□□ 0.1
PTCH1-213ENST00000546820 IFFO2Q5TF58 517 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 IL31RAQ8NI17 732 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 RASGRP4Q8TDF6 673 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 CDHR1Q96JP9 859 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 PGBD1Q96JS3 809 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 AP5M1Q9H0R1 490 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 PDGFCQ9NRA1 345 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 RTEL1Q9NZ71 1219 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 Q9Y3F1 56 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 DDX49Q9Y6V7 483 aaKnown RBP15.7■□□□□ 0.1
PTCH1-213ENST00000546820 LCTP09848 1927 aa15.7■□□□□ 0.1
PTCH1-213ENST00000546820 M0R2N6 131 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 DUSP11O75319 330 aaKnown RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 TXNP10599 105 aaKnown RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 ADCYAP1R1P41586 468 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 GJA8P48165 433 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 MRPS9P82933 396 aaKnown RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 GUCY1B3Q02153 619 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 NPY5RQ15761 445 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 DUSP28Q4G0W2 176 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 DIS3L2Q8IYB7 885 aaKnown RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 ARRDC4Q8NCT1 418 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 U2AF1L4Q8WU68 220 aaKnown RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 INPP4AQ96PE3 977 aaPredicted RBP15.69■□□□□ 0.1
PTCH1-213ENST00000546820 MRVI1Q9Y6F6 885 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 MCM3APO60318 1980 aa15.69■□□□□ 0.1
PTCH1-213ENST00000546820 BTBD18B2RXH4 712 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 ADAMTS3O15072 1205 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 FIBPO43427 364 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 PDIA4P13667 645 aaKnown RBP15.68■□□□□ 0.1
PTCH1-213ENST00000546820 CEP55Q53EZ4 464 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 LHX8Q68G74 356 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 TBCKQ8TEA7 893 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 GPRASP2Q96D09 838 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 ZFP91Q96JP5 570 aaPredicted RBP15.68■□□□□ 0.1
PTCH1-213ENST00000546820 NAP1L4Q99733 375 aaKnown RBP15.68■□□□□ 0.1
PTCH1-213ENST00000546820 MXRA8Q9BRK3 442 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 FOXP1Q9H334 677 aaPredicted RBP15.68■□□□□ 0.1
PTCH1-213ENST00000546820 JADE2Q9NQC1 790 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 XPNPEP3Q9NQH7 507 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 UBIAD1Q9Y5Z9 338 aa15.68■□□□□ 0.1
PTCH1-213ENST00000546820 SPATA31C2B4DYI2 1134 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 SMPD1P17405 629 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 ICAM3P32942 547 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 MTMR1Q13613 665 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 BRDTQ58F21 947 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-213ENST00000546820 ANO1Q5XXA6 986 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 PIK3AP1Q6ZUJ8 805 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 NIPA1Q7RTP0 329 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 RNF180Q86T96 592 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 GIMAP8Q8ND71 665 aaPredicted RBP15.67■□□□□ 0.1
PTCH1-213ENST00000546820 OXER1Q8TDS5 423 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 FOXD4L1Q9NU39 408 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 DDX41Q9UJV9 622 aaKnown RBP15.67■□□□□ 0.1
PTCH1-213ENST00000546820 OGDHLQ9ULD0 1010 aa15.67■□□□□ 0.1
PTCH1-213ENST00000546820 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-213ENST00000546820 MEIS1O00470 390 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 DYNC1LI2O43237 492 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-213ENST00000546820 ZEB2O60315 1214 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 RGS20O76081 388 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 CIITAP33076 1130 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 NR5A1Q13285 461 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 LAMC2Q13753 1193 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 NEDD9Q14511 834 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 LY6KQ17RY6 165 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 MCTP1Q6DN14 999 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 CCDC62Q6P9F0 684 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 NEK8Q86SG6 692 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 ANKLE1Q8NAG6 615 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 CRYGNQ8WXF5 182 aa15.66■□□□□ 0.1
PTCH1-213ENST00000546820 CRISPLD2Q9H0B8 497 aa15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms