RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 GNRH1P01148 92 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 TOP1P11387 765 aaKnown RBP9.75□□□□□ -0.85
VPS29-203ENST00000546588 AKR1B1P15121 316 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 GUCY1A2P33402 732 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 TNNI2P48788 182 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 RBM5P52756 815 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS29-203ENST00000546588 STK3Q13188 491 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 KIF4BQ2VIQ3 1234 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 NBPF9Q3BBW0 867 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 FAM47AQ5JRC9 791 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 CPLX2Q6PUV4 134 aaKnown RBP9.75□□□□□ -0.85
VPS29-203ENST00000546588 SYNE3Q6ZMZ3 975 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 TMEM179Q6ZVK1 233 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 SV2AQ7L0J3 742 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 TMC7Q7Z402 723 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 CATIPQ7Z7H3 387 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 MICU3Q86XE3 530 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 SVOPQ8N4V2 548 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 CEP95Q96GE4 821 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 INSM2Q96T92 566 aaPredicted RBP9.75□□□□□ -0.85
VPS29-203ENST00000546588 TMEM47Q9BQJ4 181 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 ZKSCAN3Q9BRR0 538 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 PRDM16Q9HAZ2 1276 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 TOMM22Q9NS69 142 aa9.75□□□□□ -0.85
VPS29-203ENST00000546588 CNOT7Q9UIV1 285 aaKnown RBP9.75□□□□□ -0.85
VPS29-203ENST00000546588 UTRNP46939 3433 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 A6NJY4 79 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 PRPF3O43395 683 aaKnown RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 GRIN3BO60391 1043 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 LILRA1O75019 489 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 TTLL1O95922 423 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 KIF5BP33176 963 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 ADD1P35611 737 aaKnown RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 CACNB3P54284 484 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 CCT2P78371 535 aaKnown RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 NFKBIBQ15653 356 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 TSNAXIP1Q2TAA8 658 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 ARHGAP27Q6ZUM4 889 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 APOBEC3FQ8IUX4 373 aaKnown RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 CRACR2BQ8N4Y2 399 aaPredicted RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 KDF1Q8NAX2 398 aaPredicted RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 GMCL1P1Q8NEA9 526 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 FBXO18Q8NFZ0 1043 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 GBP4Q96PP9 640 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 CSRNP1Q96S65 589 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 SPZ1Q9BXG8 430 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 ZSCAN16Q9H4T2 348 aaPredicted RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 KANSL2Q9H9L4 492 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 MAD2L2Q9UI95 211 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 ATP6V1DQ9Y5K8 247 aa9.74□□□□□ -0.85
VPS29-203ENST00000546588 MORC2Q9Y6X9 1032 aaPredicted RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 COL11A1P12107 1806 aaPredicted RBP9.74□□□□□ -0.85
VPS29-203ENST00000546588 SHTN1A0MZ66 631 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 PHF20L1A8MW92 1017 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 CPLX1O14810 134 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 DEXIO95424 95 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 BAG4O95429 457 aaKnown RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 P4HBP07237 508 aaKnown RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 MCM4P33991 863 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 GNAQP50148 359 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 SMTNP53814 917 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 RELBQ01201 579 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 PKN1Q16512 942 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 CERKLQ49MI3 558 aaPredicted RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 LARP1BQ659C4 914 aaKnown RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 ATL3Q6DD88 541 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 NFXL1Q6ZNB6 911 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 CDC37L1Q7L3B6 337 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 WASF1Q92558 559 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 LZTS2Q9BRK4 669 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 KAT14Q9H8E8 782 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 ADARB2Q9NS39 739 aaKnown RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 SCHIP1Q9P0W5 487 aaPredicted RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 ORC3Q9UBD5 711 aaPredicted RBP9.73□□□□□ -0.85
VPS29-203ENST00000546588 ZNF112Q9UJU3 913 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 ELP1O95163 1332 aa9.73□□□□□ -0.85
VPS29-203ENST00000546588 H7C1D1 291 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 hCG_1984214I3L0E3 225 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 MAFGO15525 162 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 PDHBP11177 359 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 NPR3P17342 541 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 U2AF2P26368 475 aaKnown RBP eCLIP9.72□□□□□ -0.852e-6■■□□□ 11.9
VPS29-203ENST00000546588 EIF1AXP47813 144 aaKnown RBP9.72□□□□□ -0.85
VPS29-203ENST00000546588 TCP10Q12799 353 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 RESTQ13127 1097 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 TLR1Q15399 786 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 ASPRV1Q53RT3 343 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 COX20Q5RI15 118 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 SIAH1Q8IUQ4 282 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 ZNF713Q8N859 430 aaPredicted RBP9.72□□□□□ -0.85
VPS29-203ENST00000546588 CTCFLQ8NI51 663 aaPredicted RBP9.72□□□□□ -0.85
VPS29-203ENST00000546588 HOOK2Q96ED9 719 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 MTMR8Q96EF0 704 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 GMCL1Q96IK5 515 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 MYL10Q9BUA6 226 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 RBCK1Q9BYM8 510 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 RIOX1Q9H6W3 641 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 SH3GLB2Q9NR46 395 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 RNF181Q9P0P0 153 aa9.72□□□□□ -0.85
VPS29-203ENST00000546588 STIM2Q9P246 746 aa9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms