RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 PCDHA8Q9Y5H6 950 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 COL4A3BPQ9Y5P4 624 aa17.25■□□□□ 0.35
CUX1-211ENST00000546411 POTEB3A0JP26 581 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 POTECB2RU33 542 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 HGSO14964 777 aaPredicted RBP17.24■□□□□ 0.35
CUX1-211ENST00000546411 BMP3P12645 472 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 SMTNP53814 917 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 POTEBQ6S5H4 581 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 TC2NQ8N9U0 490 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 CCDC114Q96M63 670 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 PI4KBQ9UBF8 816 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 STK17AQ9UEE5 414 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 STAT3P40763 770 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 EARS2Q5JPH6 523 aaKnown RBP17.24■□□□□ 0.35
CUX1-211ENST00000546411 GBP6Q6ZN66 633 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 HOOK3Q86VS8 718 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 UHMK1Q8TAS1 419 aaKnown RBP17.24■□□□□ 0.35
CUX1-211ENST00000546411 DPH5Q9H2P9 285 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 THAP9Q9H5L6 903 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 TFR2Q9UP52 801 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 SLIT1O75093 1534 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 KIF11P52732 1056 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 MRRFQ96E11 262 aaKnown RBP17.24■□□□□ 0.35
CUX1-211ENST00000546411 MAP3K14Q99558 947 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 RIOK1Q9BRS2 568 aaKnown RBP17.24■□□□□ 0.35
CUX1-211ENST00000546411 ANO3Q9BYT9 981 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 MAGEF1Q9HAY2 307 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 SWAP70Q9UH65 585 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 RASAL2Q9UJF2 1139 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 FAN1Q9Y2M0 1017 aa17.24■□□□□ 0.35
CUX1-211ENST00000546411 K7ENM7 598 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 PRPHP41219 470 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 CTTNQ14247 550 aaKnown RBP17.23■□□□□ 0.35
CUX1-211ENST00000546411 CCDC26Q8TAB7 109 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 PCIF1Q9H4Z3 704 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 TCP1P17987 556 aaKnown RBP17.23■□□□□ 0.35
CUX1-211ENST00000546411 RAD9BQ6WBX8 426 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 CPLX4Q7Z7G2 160 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 NIM1KQ8IY84 436 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 PPM1KQ8N3J5 372 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 NEDD1Q8NHV4 660 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 COA1Q9GZY4 146 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 TRIM10Q9UDY6 481 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 CNTNAP5Q8WYK1 1306 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 TCRBV5S4A2TA0A5A2 114 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 GNA14O95837 355 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 STK4Q13043 487 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 PRR5LQ6MZQ0 368 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 MICALCLQ6ZW33 695 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 ZNF710Q8N1W2 664 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 FAM217BQ9NTX9 383 aaPredicted RBP17.23■□□□□ 0.35
CUX1-211ENST00000546411 CCPG1Q9ULG6 757 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 GINS2Q9Y248 185 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 CCDC151A5D8V7 595 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 DPYDQ12882 1025 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 FAM102BQ5T8I3 360 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 RASGRP2Q7LDG7 609 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 KRT12Q99456 494 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 SH3GLB2Q9NR46 395 aa17.23■□□□□ 0.35
CUX1-211ENST00000546411 H2AFZP0C0S5 128 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 DLATP10515 647 aaKnown RBP17.22■□□□□ 0.35
CUX1-211ENST00000546411 H2AFVQ71UI9 128 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 PLCD4Q9BRC7 762 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 NUCKS1Q9H1E3 243 aaKnown RBP17.22■□□□□ 0.35
CUX1-211ENST00000546411 POTEFA5A3E0 1075 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 POTEIP0CG38 1075 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 CRKP46108 304 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 XKR9Q5GH70 373 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 ANKRD40Q6AI12 368 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 POTEGQ6S5H5 508 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 POTEEQ6S8J3 1075 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 GSPT2Q8IYD1 628 aaKnown RBP17.22■□□□□ 0.35
CUX1-211ENST00000546411 ADGRF4Q8IZF3 695 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 PICK1Q9NRD5 415 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 ADD3Q9UEY8 706 aaKnown RBP17.22■□□□□ 0.35
CUX1-211ENST00000546411 USTQ9Y2C2 406 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 KRIT1O00522 736 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 PAK2Q13177 524 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 CC2D2BQ6DHV5 1058 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 OTUD6BQ8N6M0 293 aa17.22■□□□□ 0.35
CUX1-211ENST00000546411 C21orf2O43822 256 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 CD44P16070 742 aaKnown RBP17.21■□□□□ 0.35
CUX1-211ENST00000546411 RASA1P20936 1047 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 VPS41P49754 854 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 MNAT1P51948 309 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 CALCOCO2Q13137 446 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 MLXIPQ9HAP2 919 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 AGPAT5Q9NUQ2 364 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 LARSQ9P2J5 1176 aaKnown RBP17.21■□□□□ 0.35
CUX1-211ENST00000546411 ZBTB5O15062 677 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 DMTNQ08495 405 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 NCAPHQ15003 741 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 SEL1L2Q5TEA6 688 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 LRP10Q7Z4F1 713 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 RETREG2Q8NC44 543 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 RPGRIP1Q96KN7 1286 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 TRIM9Q9C026 710 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 KCNK9Q9NPC2 374 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 HPSEQ9Y251 543 aa17.21■□□□□ 0.35
CUX1-211ENST00000546411 A0A1B0GTH6 734 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms