RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 LEXMQ3ZCV2 418 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 LRRC8DQ7L1W4 858 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 TGS1Q96RS0 853 aaKnown RBP15.1■□□□□ 0.01
USP28-212ENST00000544750 MPHOSPH6Q99547 160 aaKnown RBP15.1■□□□□ 0.01
USP28-212ENST00000544750 GTF2IRD1Q9UHL9 959 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 SALL3Q9BXA9 1300 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 RALGAPA2Q2PPJ7 1873 aa15.1■□□□□ 0.01
USP28-212ENST00000544750 ABHD14A-ACY1A0A1B0GW23 586 aa15.09■□□□□ 0.01
USP28-212ENST00000544750 PRR33A8MZF0 331 aa15.09■□□□□ 0.01
USP28-212ENST00000544750 TRIM71Q2Q1W2 868 aaKnown RBP15.09■□□□□ 0.01
USP28-212ENST00000544750 ZBED2Q9BTP6 218 aa15.09■□□□□ 0.01
USP28-212ENST00000544750 MAF1Q9H063 256 aa15.09■□□□□ 0.01
USP28-212ENST00000544750 B4DLN1 442 aa15.08■□□□□ 0
USP28-212ENST00000544750 HAS3O00219 553 aa15.08■□□□□ 0
USP28-212ENST00000544750 GH1P01241 217 aa15.08■□□□□ 0
USP28-212ENST00000544750 MRPL12P52815 198 aaKnown RBP15.08■□□□□ 0
USP28-212ENST00000544750 MBTPS1Q14703 1052 aa15.08■□□□□ 0
USP28-212ENST00000544750 LY6KQ17RY6 165 aa15.08■□□□□ 0
USP28-212ENST00000544750 GJD3Q8N144 294 aa15.08■□□□□ 0
USP28-212ENST00000544750 TBC1D5Q92609 795 aa15.08■□□□□ 0
USP28-212ENST00000544750 WNT8BQ93098 351 aa15.08■□□□□ 0
USP28-212ENST00000544750 COL20A1Q9P218 1284 aa15.08■□□□□ 0
USP28-212ENST00000544750 HDAC6Q9UBN7 1215 aa15.08■□□□□ 0
USP28-212ENST00000544750 MTUS1Q9ULD2 1270 aa15.08■□□□□ 0
USP28-212ENST00000544750 WDFY4Q6ZS81 3184 aa15.08■□□□□ 0
USP28-212ENST00000544750 EFCAB14O75071 495 aa15.07■□□□□ 0
USP28-212ENST00000544750 FGAP02671 866 aa15.07■□□□□ 0
USP28-212ENST00000544750 IL9P15248 144 aa15.07■□□□□ 0
USP28-212ENST00000544750 RRP1P56182 461 aaKnown RBP15.07■□□□□ 0
USP28-212ENST00000544750 EMID1Q96A84 441 aaPredicted RBP15.07■□□□□ 0
USP28-212ENST00000544750 TTC14Q96N46 770 aa15.07■□□□□ 0
USP28-212ENST00000544750 TAAR1Q96RJ0 339 aa15.07■□□□□ 0
USP28-212ENST00000544750 DDX41Q9UJV9 622 aaKnown RBP15.07■□□□□ 0
USP28-212ENST00000544750 LAMA4Q16363 1823 aa15.07■□□□□ 0
USP28-212ENST00000544750 COL4A6Q14031 1691 aa15.06■□□□□ 0
USP28-212ENST00000544750 TRIOO75962 3097 aa15.06■□□□□ 0
USP28-212ENST00000544750 C5orf42Q9H799 3197 aa15.06■□□□□ 0
USP28-212ENST00000544750 GRXCR2A6NFK2 248 aa15.06■□□□□ 0
USP28-212ENST00000544750 CASTP20810 708 aaKnown RBP15.06■□□□□ 0
USP28-212ENST00000544750 KCNA5P22460 613 aa15.06■□□□□ 0
USP28-212ENST00000544750 CHMP4BP1P59074 171 aa15.06■□□□□ 0
USP28-212ENST00000544750 HTRA4P83105 476 aaPredicted RBP15.06■□□□□ 0
USP28-212ENST00000544750 PTK7Q13308 1070 aa15.06■□□□□ 0
USP28-212ENST00000544750 IKBKEQ14164 716 aa15.06■□□□□ 0
USP28-212ENST00000544750 SEPT14Q6ZU15 432 aa15.06■□□□□ 0
USP28-212ENST00000544750 ALYREFQ86V81 257 aaKnown RBP15.06■□□□□ 0
USP28-212ENST00000544750 NEK9Q8TD19 979 aa15.06■□□□□ 0
USP28-212ENST00000544750 SP7Q8TDD2 431 aaPredicted RBP15.06■□□□□ 0
USP28-212ENST00000544750 SYTL5Q8TDW5 730 aaPredicted RBP15.06■□□□□ 0
USP28-212ENST00000544750 C17orf80Q9BSJ5 609 aa15.06■□□□□ 0
USP28-212ENST00000544750 ZMYM6O95789 1325 aa15.06■□□□□ 0
USP28-212ENST00000544750 F2P00734 622 aa15.05■□□□□ -0
USP28-212ENST00000544750 HOXD8P13378 290 aaPredicted RBP15.05■□□□□ -0
USP28-212ENST00000544750 MX1P20591 662 aa15.05■□□□□ -0
USP28-212ENST00000544750 PSEN2P49810 448 aa15.05■□□□□ -0
USP28-212ENST00000544750 HIC1Q14526 733 aa15.05■□□□□ -0
USP28-212ENST00000544750 DGKDQ16760 1214 aa15.05■□□□□ -0
USP28-212ENST00000544750 USH1GQ495M9 461 aa15.05■□□□□ -0
USP28-212ENST00000544750 RRP12Q5JTH9 1297 aaKnown RBP15.05■□□□□ -0
USP28-212ENST00000544750 ZNF618Q5T7W0 954 aa15.05■□□□□ -0
USP28-212ENST00000544750 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.05■□□□□ -0
USP28-212ENST00000544750 CPVLQ9H3G5 476 aa15.05■□□□□ -0
USP28-212ENST00000544750 HELLSQ9NRZ9 838 aa15.05■□□□□ -0
USP28-212ENST00000544750 INSL6Q9Y581 213 aa15.05■□□□□ -0
USP28-212ENST00000544750 DOCK5Q9H7D0 1870 aa15.04■□□□□ -0
USP28-212ENST00000544750 POTEB3A0JP26 581 aa15.04■□□□□ -0
USP28-212ENST00000544750 LGR5O75473 907 aa15.04■□□□□ -0
USP28-212ENST00000544750 ZNF200P98182 395 aaPredicted RBP15.04■□□□□ -0
USP28-212ENST00000544750 COL19A1Q14993 1142 aa15.04■□□□□ -0
USP28-212ENST00000544750 STXBP2Q15833 593 aa15.04■□□□□ -0
USP28-212ENST00000544750 GPATCH4Q5T3I0 446 aaKnown RBP15.04■□□□□ -0
USP28-212ENST00000544750 PTCRAQ6ISU1 281 aaPredicted RBP15.04■□□□□ -0
USP28-212ENST00000544750 POTEBQ6S5H4 581 aa15.04■□□□□ -0
USP28-212ENST00000544750 CHST3Q7LGC8 479 aa15.04■□□□□ -0
USP28-212ENST00000544750 FBXO22Q8NEZ5 403 aa15.04■□□□□ -0
USP28-212ENST00000544750 NSUN6Q8TEA1 469 aaKnown RBP15.04■□□□□ -0
USP28-212ENST00000544750 IWS1Q96ST2 819 aa15.04■□□□□ -0
USP28-212ENST00000544750 TOMM22Q9NS69 142 aa15.04■□□□□ -0
USP28-212ENST00000544750 PCDHB15Q9Y5E8 787 aa15.04■□□□□ -0
USP28-212ENST00000544750 KAT6AQ92794 2004 aa15.04■□□□□ -0
USP28-212ENST00000544750 ABCB11O95342 1321 aa15.03■□□□□ -0
USP28-212ENST00000544750 A0A0D9SFI3 127 aa15.03■□□□□ -0
USP28-212ENST00000544750 GOLGA8HP0CJ92 632 aa15.03■□□□□ -0
USP28-212ENST00000544750 HSPD1P10809 573 aaKnown RBP15.03■□□□□ -0
USP28-212ENST00000544750 ALADP13716 330 aa15.03■□□□□ -0
USP28-212ENST00000544750 MFSD10Q14728 455 aa15.03■□□□□ -0
USP28-212ENST00000544750 KIAA0753Q2KHM9 967 aa15.03■□□□□ -0
USP28-212ENST00000544750 FAM117BQ6P1L5 589 aa15.03■□□□□ -0
USP28-212ENST00000544750 C7orf31Q8N865 590 aa15.03■□□□□ -0
USP28-212ENST00000544750 PPTC7Q8NI37 304 aa15.03■□□□□ -0
USP28-212ENST00000544750 MRPL38Q96DV4 380 aaKnown RBP15.03■□□□□ -0
USP28-212ENST00000544750 FAM227BQ96M60 508 aa15.03■□□□□ -0
USP28-212ENST00000544750 ALG1Q9BT22 464 aa15.03■□□□□ -0
USP28-212ENST00000544750 KATNAL1Q9BW62 490 aa15.03■□□□□ -0
USP28-212ENST00000544750 UBA5Q9GZZ9 404 aa15.03■□□□□ -0
USP28-212ENST00000544750 ZNF286BP0CG31 522 aa15.02■□□□□ -0
USP28-212ENST00000544750 LAMC2Q13753 1193 aa15.02■□□□□ -0
USP28-212ENST00000544750 CDC37Q16543 378 aaPredicted RBP15.02■□□□□ -0
USP28-212ENST00000544750 PUS10Q3MIT2 529 aaKnown RBP15.02■□□□□ -0
USP28-212ENST00000544750 DBF4BQ8NFT6 615 aa15.02■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms