RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 CDH23Q9H251 3354 aa5.03□□□□□ -1.6
SNHG1-220ENST00000544550 ELP1O95163 1332 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 A0A1B0GTH6 734 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 FIGNL2A6NMB9 653 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 EYA2O00167 538 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 ADAM23O75077 832 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 FGBP02675 491 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 AKR1A1P14550 325 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 CSF2RAP15509 400 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 RHOQP17081 205 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 MAPK1P28482 360 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 RHBDL3P58872 404 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 HIF1AQ16665 826 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 ATP2B3Q16720 1220 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 CATSPERGQ6ZRH7 1159 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 FOXP4Q8IVH2 680 aaPredicted RBP5.02□□□□□ -1.61
SNHG1-220ENST00000544550 CRACR2BQ8N4Y2 399 aaPredicted RBP5.02□□□□□ -1.61
SNHG1-220ENST00000544550 MB21D1Q8N884 522 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 RHPN1Q8TCX5 695 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 KAZALD1Q96I82 304 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 GLT1D1Q96MS3 346 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 CITED4Q96RK1 184 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 PRRX2Q99811 253 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 NOL10Q9BSC4 688 aaKnown RBP5.02□□□□□ -1.61
SNHG1-220ENST00000544550 MROH8Q9H579 483 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 IL23AQ9NPF7 189 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 TIMMDC1Q9NPL8 285 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 ABCF2Q9UG63 623 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 DMGDHQ9UI17 866 aaKnown RBP5.02□□□□□ -1.61
SNHG1-220ENST00000544550 DNMT3LQ9UJW3 386 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 YBX2Q9Y2T7 364 aaKnown RBP5.02□□□□□ -1.61
SNHG1-220ENST00000544550 PCDHA11Q9Y5I1 949 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 MTCH2Q9Y6C9 303 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 PHIPQ8WWQ0 1821 aa5.02□□□□□ -1.61
SNHG1-220ENST00000544550 IL16Q14005 1332 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 PRUNE2Q8WUY3 3088 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 A0A0U1RQG5 324 aaPredicted RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 ANKRD33BA6NCL7 494 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 TGFBR3LH3BV60 316 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 NDUFB5O43674 189 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 BAG3O95817 575 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 PGK1P00558 417 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 HLA-DOAP06340 250 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 NBPF7P0C2Y1 421 aaPredicted RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 ACRP10323 421 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 MSX1P28360 303 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 ACLYP53396 1101 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 RRP1BQ14684 758 aaKnown RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 TMEM67Q5HYA8 995 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 IER5Q5VY09 327 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SLC4A10Q6U841 1118 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 C16orf59Q7L2K0 433 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 METTL16Q86W50 562 aaKnown RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 TREML1Q86YW5 311 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 NPAS4Q8IUM7 802 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 TEX11Q8IYF3 940 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 RPUSD2Q8IZ73 545 aaKnown RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 RGL4Q8IZJ4 473 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 GJD3Q8N144 294 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 PCSK9Q8NBP7 692 aaKnown RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SCARF2Q96GP6 870 aaPredicted RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 MAML3Q96JK9 1138 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SUSD3Q96L08 255 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 MFSD14AQ96MC6 490 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SEZ6LQ9BYH1 1024 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SPATC1LQ9H0A9 340 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SPC25Q9HBM1 224 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 HOXC10Q9NYD6 342 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 BTBD7Q9P203 1132 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 BRPF3Q9ULD4 1205 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 ZBTB21Q9ULJ3 1066 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 CNPY2Q9Y2B0 182 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 DIS3Q9Y2L1 958 aaKnown RBP5.01□□□□□ -1.61
SNHG1-220ENST00000544550 DYRK1BQ9Y463 629 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 SLC4A7Q9Y6M7 1214 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 FRMPD3Q5JV73 1810 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 PTPRFP10586 1907 aa5.01□□□□□ -1.61
SNHG1-220ENST00000544550 RLFQ13129 1914 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 ARVCFO00192 962 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 DCXO43602 365 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 COBLO75128 1261 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 ADAMTS4O75173 837 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 VAMP4O75379 141 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 CIAO1O76071 339 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 MICAL2O94851 1124 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 SLC25A27O95847 323 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 PFKMP08237 780 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 FCER1AP12319 257 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 ATP2A2P16615 1042 aaKnown RBP5□□□□□ -1.61
SNHG1-220ENST00000544550 VCAM1P19320 739 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 CST5P28325 142 aaPredicted RBP5□□□□□ -1.61
SNHG1-220ENST00000544550 MZF1P28698 734 aaPredicted RBP5□□□□□ -1.61
SNHG1-220ENST00000544550 ZAP70P43403 619 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 PHKA1P46020 1223 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 MECOMQ03112 1051 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 COG2Q14746 738 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 PKN1Q16512 942 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 ZNF800Q2TB10 664 aaPredicted RBP eCLIP5□□□□□ -1.61
SNHG1-220ENST00000544550 OTOP2Q7RTS6 562 aa5□□□□□ -1.61
SNHG1-220ENST00000544550 ATCAYQ86WG3 371 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms