RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 FCER1AP12319 257 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 KLRK1P26718 216 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 EIF4A3P38919 411 aaKnown RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 SOGA3Q5TF21 947 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 PDXDC1Q6P996 788 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 C2CD5Q86YS7 1000 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 RRP36Q96EU6 259 aaKnown RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 PLIN2Q99541 437 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 RAB34Q9BZG1 259 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 LUC7LQ9NQ29 371 aaKnown RBP15.22■□□□□ 0.03
VPS33A-208ENST00000543633 KIF13BQ9NQT8 1826 aa15.22■□□□□ 0.03
VPS33A-208ENST00000543633 ATXN2Q99700 1313 aaKnown RBP15.21■□□□□ 0.03
VPS33A-208ENST00000543633 KLRF2D3W0D1 207 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 AKR1B10O60218 316 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 LDHCP07864 332 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 RASA1P20936 1047 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 SKOR1P84550 965 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 TMEM266Q2M3C6 531 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 ASTE1Q2TB18 679 aaPredicted RBP15.21■□□□□ 0.03
VPS33A-208ENST00000543633 LETM2Q2VYF4 491 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 CCDC181Q5TID7 509 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 BAP1Q92560 729 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 TSG101Q99816 390 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 LRRC4BQ9NT99 713 aa15.21■□□□□ 0.03
VPS33A-208ENST00000543633 LDHBP07195 334 aaKnown RBP15.21■□□□□ 0.02
VPS33A-208ENST00000543633 MAGEA1P43355 309 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 EHHADHQ08426 723 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 GRB10Q13322 594 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 TTC31Q49AM3 519 aaPredicted RBP15.21■□□□□ 0.02
VPS33A-208ENST00000543633 HAUS3Q68CZ6 603 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 SND1Q7KZF4 910 aaKnown RBP eCLIP15.21■□□□□ 0.02
VPS33A-208ENST00000543633 NLRP3Q96P20 1036 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 NOX5Q96PH1 765 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 MTMR9Q96QG7 549 aa15.21■□□□□ 0.02
VPS33A-208ENST00000543633 SEC63Q9UGP8 760 aaKnown RBP15.21■□□□□ 0.02
VPS33A-208ENST00000543633 A0A087WUV0 522 aaPredicted RBP15.2■□□□□ 0.02
VPS33A-208ENST00000543633 GRID2IPA4D2P6 1211 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 SMCO2A6NFE2 343 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 RPS6KA4O75676 772 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 MOCS3O95396 460 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 NOVP48745 357 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 PDIA5Q14554 519 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 LRRC55Q6ZSA7 311 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 C10orf71Q711Q0 1435 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 KRT26Q7Z3Y9 468 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 AMIGO3Q86WK7 504 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 GSPT2Q8IYD1 628 aaKnown RBP15.2■□□□□ 0.02
VPS33A-208ENST00000543633 REXO1Q8N1G1 1221 aaKnown RBP15.2■□□□□ 0.02
VPS33A-208ENST00000543633 LARP4BQ92615 738 aaKnown RBP15.2■□□□□ 0.02
VPS33A-208ENST00000543633 LRRC1Q9BTT6 524 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 BLOC1S4Q9NUP1 217 aa15.2■□□□□ 0.02
VPS33A-208ENST00000543633 FOCADQ5VW36 1801 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 USP17L3A6NCW0 530 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 USP17L4A6NCW7 530 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 EIF3HO15372 352 aaKnown RBP eCLIP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 SLC26A4O43511 780 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 HSF2BPO75031 334 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 ZMYND10O75800 440 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 TRIM37O94972 964 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 PLEKP08567 350 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 RXRBP28702 533 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 IRAK1P51617 712 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 USP17L1Q7RTZ2 530 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 MREGQ8N565 214 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 C1orf131Q8NDD1 294 aaKnown RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 NEDD1Q8NHV4 660 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 RIN2Q8WYP3 895 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 DYNLL2Q96FJ2 89 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 RUFY1Q96T51 708 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 CAPS2Q9BXY5 557 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 MLXIPQ9HAP2 919 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 TFCP2L1Q9NZI6 479 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 CEP72Q9P209 647 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 PLIN4Q96Q06 1357 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 MYMKA6NI61 221 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 LRRC53A6NM62 1247 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 TECP42680 631 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 NOP2P46087 812 aaKnown RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 CFAP221Q4G0U5 840 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 TMEM119Q4V9L6 283 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 C8orf74Q6P047 294 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 C16orf86Q6ZW13 317 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 SMIM5Q71RC9 77 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 TBCKQ8TEA7 893 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 SH3RF3Q8TEJ3 882 aaPredicted RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 RAD54LQ92698 747 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 CDK5RAP3Q96JB5 506 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 DMGDHQ9UI17 866 aaKnown RBP15.19■□□□□ 0.02
VPS33A-208ENST00000543633 MYH10P35580 1976 aa15.19■□□□□ 0.02
VPS33A-208ENST00000543633 ATP8B3O60423 1300 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 SHTN1A0MZ66 631 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 CES2O00748 559 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 EPHB6O15197 1021 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 ZEB2O60315 1214 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 PPP1R18Q6NYC8 613 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 C15orf52Q6ZUT6 534 aaKnown RBP15.18■□□□□ 0.02
VPS33A-208ENST00000543633 RRAGAQ7L523 313 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 IFT20Q8IY31 132 aa15.18■□□□□ 0.02
VPS33A-208ENST00000543633 EIF1ADQ8N9N8 165 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms