RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 PURAQ00577 322 aaKnown RBP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 IKQ13123 557 aaPredicted RBP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 TNNI3KQ59H18 835 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 C6orf132Q5T0Z8 1188 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 TAPT1Q6NXT6 567 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 LIN28BQ6ZN17 250 aaKnown RBP eCLIP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 ZBTB33Q86T24 672 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 CERS3Q8IU89 383 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 MYOCDQ8IZQ8 938 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 CCDC155Q8N6L0 562 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 FAM133AQ8N9E0 248 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 OR6J1Q8NGC5 347 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 KCNG4Q8TDN1 519 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 NKD2Q969F2 451 aaPredicted RBP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 RPGRIP1Q96KN7 1286 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 WDR11Q9BZH6 1224 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 KANSL2Q9H9L4 492 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 PRM3Q9NNZ6 103 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 SMC4Q9NTJ3 1288 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 SWAP70Q9UH65 585 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 FPGT-TNNI3KV9GXZ4 949 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 BAZ2AQ9UIF9 1905 aaKnown RBP5.73□□□□□ -1.49
LIMS1-214ENST00000542845 ZDBF2Q9HCK1 2354 aa5.73□□□□□ -1.49
LIMS1-214ENST00000542845 ZFHX2Q9C0A1 2572 aaPredicted RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 PNMA6EA0A0J9YXQ4 647 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ABHD14A-ACY1A0A1B0GW23 586 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 F5H6K3 240 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 H3BNC9 293 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 PRKAB2O43741 272 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 AMHP03971 560 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ALAS1P13196 640 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 SELPP16109 830 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ABL2P42684 1182 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 NDUFV1P49821 464 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 FOSBP53539 338 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 SNAP25P60880 206 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 KLRC3Q07444 240 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 SIGLEC14Q08ET2 396 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 HYAL1Q12794 435 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 LRRFIP1Q32MZ4 808 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 BRDTQ58F21 947 aaPredicted RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 NSMFQ6X4W1 530 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 LRRC8DQ7L1W4 858 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 AMOTL1Q8IY63 956 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 TMEM192Q8IY95 271 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 KIAA2013Q8IYS2 634 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 CHST13Q8NET6 341 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 AFAP1L1Q8TED9 768 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 CCDC17Q96LX7 622 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 TRERF1Q96PN7 1200 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 PURBQ96QR8 312 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 YME1L1Q96TA2 773 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 RIOK1Q9BRS2 568 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ACAD9Q9H845 621 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ARMT1Q9H993 441 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ZSWIM6Q9HCJ5 1215 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 ALG13Q9NP73 1137 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 INCENPQ9NQS7 918 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 TLR7Q9NYK1 1049 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 CLIP2Q9UDT6 1046 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 CD207Q9UJ71 328 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 NOB1Q9ULX3 412 aaKnown RBP5.72□□□□□ -1.49
LIMS1-214ENST00000542845 Q9Y3F1 56 aa5.72□□□□□ -1.49
LIMS1-214ENST00000542845 DDX11L8A8MPP1 907 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 PROB1E7EW31 1015 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 NCK2O43639 380 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 NBNO60934 754 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 GNAI3P08754 354 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 NUDT7P0C024 238 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SP100P23497 879 aaPredicted RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 CTNNB1P35222 781 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 PRSS12P56730 875 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SMAD4Q13485 552 aaKnown RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 GPNMBQ14956 572 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 DUSP28Q4G0W2 176 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SLC9C2Q5TAH2 1124 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 GDF6Q6KF10 455 aaPredicted RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 NFRKBQ6P4R8 1299 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 RBM23Q86U06 439 aaKnown RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 LCORLQ8N3X6 602 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 COPS5Q92905 334 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 RMDN1Q96DB5 314 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SAMD11Q96NU1 681 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 HINFPQ9BQA5 517 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 ALG1Q9BT22 464 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SLC38A10Q9HBR0 1119 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 DCP1AQ9NPI6 582 aaPredicted RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 A1CFQ9NQ94 594 aaKnown RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 RNF146Q9NTX7 359 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 RALYQ9UKM9 306 aaKnown RBP5.71□□□□□ -1.5
LIMS1-214ENST00000542845 MYH4Q9Y623 1939 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 C5orf42Q9H799 3197 aa5.71□□□□□ -1.5
LIMS1-214ENST00000542845 SPTBN4Q9H254 2564 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ATG2AQ2TAZ0 1938 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 LOC730098B7Z3J9 87 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 TMEM232C9JQI7 657 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 ATP2A1O14983 1001 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 GRM6O15303 877 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 EFCAB14O75071 495 aa5.7□□□□□ -1.5
LIMS1-214ENST00000542845 TBX10O75333 385 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms