RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 IGKV6D-41A0A0C4DH26 115 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 A0A1B0GVL5 298 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 FAM205CA6NFA0 338 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ADAMTS3O15072 1205 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ERLIN2O94905 339 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PYGLP06737 847 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RHOXF2BP0C7M4 288 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ZNF24P17028 368 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 KCNA3P22001 575 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CMA1P23946 247 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 TPP2P29144 1249 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 COPB2P35606 906 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 KCNA1Q09470 495 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PFKFB3Q16875 520 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CFAP100Q494V2 611 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 SHC4Q6S5L8 630 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RASGRP2Q7LDG7 609 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CCDC12Q8WUD4 166 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ZDHHC15Q96MV8 337 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RHOXF2Q9BQY4 288 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 UNC45AQ9H3U1 944 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 TMEM165Q9HC07 324 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RABL2AQ9UBK7 228 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 SSUH2Q9Y2M2 353 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PCDHAC2Q9Y5I4 1007 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CCDC151A5D8V7 595 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PALM3A6NDB9 673 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ATP1A3P13637 1013 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 VCAM1P19320 739 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 MARCKSP29966 332 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CRKP46108 304 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 MAP3K9P80192 1104 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 AOC3Q16853 763 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 HSP90AA4PQ58FG1 418 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 FBXW10Q5XX13 1052 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 SAPCD2Q86UD0 394 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ZNF444Q8N0Y2 327 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ARMC2Q8NEN0 867 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 FAM204AQ9H8W3 233 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PPP2R2CQ9Y2T4 447 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 VWA3AA6NCI4 1184 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 YDJCA8MPS7 323 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CYTH3O43739 400 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 SCG2P13521 617 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PFKFB1P16118 471 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CCNHP51946 323 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 CHMP4BP1P59074 171 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 FANCCQ00597 558 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PICALMQ13492 652 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PRPF4BQ13523 1007 aaKnown RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 SAFBQ15424 915 aaKnown RBP eCLIP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RESP18Q5W5W9 173 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RSRC2Q7L4I2 434 aaKnown RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 LSM14AQ8ND56 463 aaKnown RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 IRX2Q9BZI1 471 aaPredicted RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ZNF287Q9HBT7 754 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 ABCB6Q9NP58 842 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 RYDENQ9NUL5 291 aaKnown RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 USP40Q9NVE5 1235 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 G3BP2Q9UN86 482 aaKnown RBP8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 PCDHB6Q9Y5E3 794 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 MRFAP1Q9Y605 127 aa8.88□□□□□ -0.99
PDLIM5-221ENST00000542407 A0A087WUV0 522 aaPredicted RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 WNT7AO00755 349 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 MAP2K7O14733 419 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 FECHP22830 423 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 KIF5BP33176 963 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 BAG6P46379 1132 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 UBASH3AP57075 661 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 NFIAQ12857 509 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 DHX8Q14562 1220 aaKnown RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 BRD3Q15059 726 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 RILPL1Q5EBL4 403 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 CEP95Q96GE4 821 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 FBXO2Q9UK22 296 aaPredicted RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 MYO3BQ8WXR4 1341 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 MYH8P13535 1937 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 ERLIN1O75477 346 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 KCNA2P16389 499 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 SHMT1P34896 483 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 RDXP35241 583 aaKnown RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 KRT2P35908 639 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 HDLBPQ00341 1268 aaKnown RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 AKAP17AQ02040 695 aaKnown RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 ZFPM1Q8IX07 1006 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 CLIC6Q96NY7 704 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 DESI2Q9BSY9 194 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 REPIN1Q9BWE0 567 aaKnown RBP8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 DNAJC18Q9H819 358 aa8.87□□□□□ -0.99
PDLIM5-221ENST00000542407 EME2A4GXA9 379 aaPredicted RBP8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 M0R2N6 131 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 CUTAO60888 179 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 TOP1P11387 765 aaKnown RBP8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 GRIN1Q05586 938 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 BEND6Q5SZJ8 279 aaPredicted RBP8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 SFMBT2Q5VUG0 894 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 TYW1BQ6NUM6 668 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 TBC1D5Q92609 795 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 KAT2BQ92831 832 aa8.86□□□□□ -0.99
PDLIM5-221ENST00000542407 NACA2Q9H009 215 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms