RNA–Protein interactions for RNA: ENST00000541713.5

PTPN1-202, Transcript of protein tyrosine phosphatase, non-receptor type 1, humanhuman

TSL 2 BASIC

Gene PTPN1, Length 3,469 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN1-202ENST00000541713 KSR1Q8IVT5 923 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 ZMYND12Q9H0C1 365 aa15.05■□□□□ -0
PTPN1-202ENST00000541713 ZSCAN5CA6NGD5 496 aaPredicted RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 TRIM66O15016 1216 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 PCP11498 1178 aaKnown RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 CYP2C19P33261 490 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 AMPD3Q01432 767 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 RDH13Q8NBN7 331 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 PNMA5Q96PV4 448 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 PSTPIP2Q9H939 334 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 BLOC1S4Q9NUP1 217 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 CAPN11Q9UMQ6 739 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 LEMD3Q9Y2U8 911 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 DUOX1Q9NRD9 1551 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 CLIC2O15247 247 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 KCTD16Q68DU8 428 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 SND1Q7KZF4 910 aaKnown RBP eCLIP15.04■□□□□ -0
PTPN1-202ENST00000541713 ELOA2Q8IYF1 753 aaPredicted RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 NEDD1Q8NHV4 660 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 ARHGAP20Q9P2F6 1191 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 BCL9LQ86UU0 1499 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 LRRC10BA6NIK2 292 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 PPP1R11O60927 126 aaPredicted RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 EEF1GP26641 437 aaKnown RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 SLC1A4P43007 532 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 RHBDL3P58872 404 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 KRT83P78385 493 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 CNNM4Q6P4Q7 775 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 CCDC84Q86UT8 332 aaPredicted RBP15.04■□□□□ -0
PTPN1-202ENST00000541713 FAM204AQ9H8W3 233 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 LCMT1Q9UIC8 334 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 CHD4Q14839 1912 aa15.04■□□□□ -0
PTPN1-202ENST00000541713 SRGNP10124 158 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 KIF11P52732 1056 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 TAF3Q5VWG9 929 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 CERS5Q8N5B7 392 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 CYP2W1Q8TAV3 490 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 ZNF507Q8TCN5 953 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 CCDC51Q96ER9 411 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 LRRC1Q9BTT6 524 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 LSM14BQ9BX40 385 aaKnown RBP15.03■□□□□ -0
PTPN1-202ENST00000541713 EHD4Q9H223 541 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 JMJD4Q9H9V9 463 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 MTMR4Q9NYA4 1195 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 ADAMTS1Q9UHI8 967 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 DMGDHQ9UI17 866 aaKnown RBP15.03■□□□□ -0
PTPN1-202ENST00000541713 HYOU1Q9Y4L1 999 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 PCDHA1Q9Y5I3 950 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 NOP2P46087 812 aaKnown RBP15.03■□□□□ -0
PTPN1-202ENST00000541713 GUCY2FP51841 1108 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 MIIPQ5JXC2 388 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 ADAT2Q7Z6V5 191 aaKnown RBP15.03■□□□□ -0
PTPN1-202ENST00000541713 GPBP1Q86WP2 473 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 CCSER1Q9C0I3 900 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 HAUS4Q9H6D7 363 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 SEPT11Q9NVA2 429 aaKnown RBP15.03■□□□□ -0
PTPN1-202ENST00000541713 SALL4Q9UJQ4 1053 aa15.03■□□□□ -0
PTPN1-202ENST00000541713 BICDL2A1A5D9 508 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 GOLGA6L1Q8N7Z2 621 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 FAM133AQ8N9E0 248 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 PANK4Q9NVE7 773 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 SERPINB13Q9UIV8 391 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 NID2Q14112 1375 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 ECM29Q5VYK3 1845 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 ZNF76P36508 570 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 PSMC6P62333 389 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 C16orf86Q6ZW13 317 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 KLHL7Q8IXQ5 586 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 THAP9Q9H5L6 903 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 PCDHA13Q9Y5I0 950 aa15.02■□□□□ -0
PTPN1-202ENST00000541713 M0R2N6 131 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 DDX39AO00148 427 aaKnown RBP15.02□□□□□ -0.01
PTPN1-202ENST00000541713 ZBTB39O15060 712 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 BRD3Q15059 726 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 VWA3BQ502W6 1294 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 DHX37Q8IY37 1157 aaKnown RBP15.02□□□□□ -0.01
PTPN1-202ENST00000541713 PIGOQ8TEQ8 1089 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 PYM1Q9BRP8 204 aaKnown RBP15.02□□□□□ -0.01
PTPN1-202ENST00000541713 PACSIN1Q9BY11 444 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 L1RE1Q9UN81 338 aa15.02□□□□□ -0.01
PTPN1-202ENST00000541713 PDS5AQ29RF7 1337 aaKnown RBP15.02□□□□□ -0.01
PTPN1-202ENST00000541713 ZBED6P86452 979 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 EHHADHQ08426 723 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 TBC1D5Q92609 795 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 DHTKD1Q96HY7 919 aaPredicted RBP15.01□□□□□ -0.01
PTPN1-202ENST00000541713 FAM107BQ9H098 131 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 EIF3JO75822 258 aaKnown RBP15.01□□□□□ -0.01
PTPN1-202ENST00000541713 PRPF6O94906 941 aaKnown RBP15.01□□□□□ -0.01
PTPN1-202ENST00000541713 GYS1P13807 737 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 SEPT2Q15019 361 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 WHAMMP3Q1A5X7 153 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 RBM17Q96I25 401 aaKnown RBP15.01□□□□□ -0.01
PTPN1-202ENST00000541713 PCDHB13Q9Y5F0 798 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 PAPPAQ13219 1627 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 CACNA1SQ13698 1873 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 DDR1Q08345 913 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 LEKR1Q6ZMV7 388 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 FAM53CQ9NYF3 392 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 ZBTB21Q9ULJ3 1066 aa15.01□□□□□ -0.01
PTPN1-202ENST00000541713 GPR75-ASB3A0A0A6YYF3 556 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms